View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_high_37 (Length: 238)
Name: NF5725_high_37
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_37 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 20401572 - 20401352
Alignment:
| Q |
18 |
ccattagcttttactgaaacaattgaagacataaatggaaaccccgtatttcctggtagcaaatactatattttaccacttatatctaaaggaggaggtg |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20401572 |
ccattagcttttactgaaacagttgaagacataaatggaaaccccgtatttcctggtggcaaatactatattgcaccacttatatctaaaggaggaggtg |
20401473 |
T |
|
| Q |
118 |
gaggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgttagaggctttccagttagatttatcat |
217 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20401472 |
gtggattgaagcttggtaaaacaggagactcagaatgtccagttactgtcatacaagatttttctgaggttgttagaggctttccagttaggtttatcat |
20401373 |
T |
|
| Q |
218 |
tcgagtaagacgtggtgtcat |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20401372 |
tcgagtaagacgtggtgtcat |
20401352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 20433799 - 20433579
Alignment:
| Q |
18 |
ccattagcttttactgaaacaattgaagacataaatggaaaccccgtatttcctggtagcaaatactatattttaccacttatatctaaaggaggaggtg |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20433799 |
ccattagcttttactgaaactgttgaagacataaatggaaaccccgtatttcctggtggcaaatactatattgcaccacttatatctaaaggaggaggtg |
20433700 |
T |
|
| Q |
118 |
gaggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgttagaggctttccagttagatttatcat |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
20433699 |
gtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgttagaggcttaccagttagatttaccat |
20433600 |
T |
|
| Q |
218 |
tcgagtaagacgtggtgtcat |
238 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
20433599 |
aatagtaaaacgtggtgtcat |
20433579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 24222340 - 24222264
Alignment:
| Q |
114 |
ggtggaggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgt |
190 |
Q |
| |
|
||||| ||||||| ||||||||||||| | ||||| |||||||| ||||||| || ||||||| |||||||||||| |
|
|
| T |
24222340 |
ggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattctgaggttgt |
24222264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University