View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_high_40 (Length: 207)
Name: NF5725_high_40
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_40 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 12886103 - 12886286
Alignment:
| Q |
24 |
ttggatacatagaataaagaagatagcacttggtgtggcacaaggtaaatgttatcttcaccatgattgtgcataggnnnnnnntgagaatgaaaagaaa |
123 |
Q |
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| T |
12886103 |
ttggatacataggataaagaagatagcacttggtgtggcacaaggtaaatgttatcttcaccataattgtgcataggaaaaaaatgagaatgaaaagaaa |
12886202 |
T |
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| Q |
124 |
agttttcattgcttttggagtgttgggattgtgaatgagaagaaggtcgtgttcaacgatctaaatttaagggtaagaaggttt |
207 |
Q |
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| T |
12886203 |
agttttcattgtttttggagtgttgggattgtgaatgagaagaaggtcgtgttcaacgagctaaatttaagggtaagaaggttt |
12886286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 13224169 - 13224077
Alignment:
| Q |
108 |
tgagaatgaaaagaaaagttttcattgcttttggagtgttgggattgtgaatgagaagaaggtcgtgttcaacgatctaaatttaagggtaagaag |
203 |
Q |
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| T |
13224169 |
tgagaaagaaaagaaaaggtttcattgttttggaattgtggggattgtgaatga---gaaggttgtgttcaatgaggtaaatttaagggtaagaag |
13224077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 13147213 - 13147161
Alignment:
| Q |
43 |
aagatagcacttggtgtggcacaaggtaaatgttatcttcaccatgattgtgc |
95 |
Q |
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| T |
13147213 |
aagatagcacttggtgtggcacaagctatatgttatttacatcatgattgtgc |
13147161 |
T |
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