View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_high_5 (Length: 570)
Name: NF5725_high_5
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_high_5 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 34694536 - 34694011
Alignment:
| Q |
1 |
tcacgtatcttcttaatctcatctctacgtggattcgttgtccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
34694536 |
tcacgtatcttcttaatctcatctctacgtggattcgtcgtccctgagttatagatggcttcaagaatgtggatttgctcaggttttgggatccatcttg |
34694437 |
T |
|
| Q |
101 |
gtcttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaa |
200 |
Q |
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| T |
34694436 |
gccttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgtaagccgatcaaacatgcaaagtttacaaattataaaattgaccgaa |
34694337 |
T |
|
| Q |
201 |
agatattcattacactgtatgaaccatggagtattatgatatttccataactaattttttatgggttagatttgcttgaatgtgtgaataaggtcagacc |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694336 |
agatattcattacattgtatgaaccatggagtattatgatatttctataactaattttttatgggttagatttgcttgaatgtgtgaataaggtcagacc |
34694237 |
T |
|
| Q |
301 |
atcggaaaagatcaaataattgacacagtgtgaatttaggaaacattacttgcattcaaatcctaaatttacattgtcaagcaaatatggtcagaccatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694236 |
atcggaaaagatcaaataattgacacagtgtgaatttaggaaacattccttgcattcaaatcctaaatttacattgtcaagcaaatatggtcagaccatt |
34694137 |
T |
|
| Q |
401 |
ggaaaagatcaaatagttgatgttagatttaggcttttacannnnnnnaaagccaagattaatctttttaaagctaggattagaaaagatcaaatagtag |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34694136 |
ggaaaagatcaaatagttgatgttagatttaggcttttacatttttttaaagctaagattaatctttttaaagctaggattagaaaagatcatatagtag |
34694037 |
T |
|
| Q |
501 |
agatcagatttgtttggtttgccgtt |
526 |
Q |
| |
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| T |
34694036 |
aggtcagatttgtttggtttgccgtt |
34694011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 34686601 - 34686324
Alignment:
| Q |
4 |
cgtatcttcttaatctcatctctacgtggattcgttgtccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtc |
103 |
Q |
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||||||||||| || |||||| | |||||||| | |||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
34686601 |
cgtatcttcttgatttcatctacaggtggattcttcatccctgagttgtagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggcc |
34686502 |
T |
|
| Q |
104 |
ttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaaga |
203 |
Q |
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||||||||||| || | |||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||| | |
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| T |
34686501 |
ttggtccaggatttctatcttcatcg------cctaaacaatatttgttataagccgatcaaacatgcaaagtttacaaattattaaattgaccaaaata |
34686408 |
T |
|
| Q |
204 |
tattcattacactgtatgaaccatggagtattatgatatttccataactaattttttatgggttagatttgcttgaatgtgtgaat |
289 |
Q |
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||| ||||||||| |||||| |||| ||||||||||||||| | ||||| |||||||||||||| | |||||||||||||||||| |
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| T |
34686407 |
tatgcattacactctatgaagcatg--gtattatgatatttctagaactatttttttatgggttatagttgcttgaatgtgtgaat |
34686324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 34686331 - 34686221
Alignment:
| Q |
328 |
gtgtgaatttaggaaacattacttgcattcaaatcctaaatttacattgtcaagcaaatatggtcagaccattggaaaagatcaaatagttgatgttaga |
427 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34686331 |
gtgtgaatttaggaaatcttacttgcattgaaatcctaaatttacattgtcgagcaaatatggtcagaccattagaaaagatcaaatagttgatgttaga |
34686232 |
T |
|
| Q |
428 |
tttaggctttt |
438 |
Q |
| |
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||||||||||| |
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| T |
34686231 |
tttaggctttt |
34686221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 34686214 - 34686158
Alignment:
| Q |
466 |
ttttaaagctaggattagaaaagatcaaatagt-agagatcagatttgtttggtttg |
521 |
Q |
| |
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||||||||||| |||||||||| |||||||||| | |||||| |||| ||||||||| |
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| T |
34686214 |
ttttaaagctaagattagaaaaaatcaaatagtaaaagatcatatttttttggtttg |
34686158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 8284422 - 8284213
Alignment:
| Q |
41 |
tccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtcttggtccaggagttatttcttcatcatctccacctaa |
140 |
Q |
| |
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|||||||||| | ||||||| |||||||| ||||| | ||||||||| |||||||||| ||||| | |||||| | ||||| ||||||||||||| |
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| T |
8284422 |
tccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttcgccatctccacctaa |
8284323 |
T |
|
| Q |
141 |
aaaatatttgtcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaagatattcattacactgtatgaaccatggagtattatgat |
240 |
Q |
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| ||||||||| |||| | ||| |||||| ||||||||||||| ||||||| || | |||| ||||||| | ||||| ||| | ||||||||||||| |
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| T |
8284322 |
acaatatttgttataagtcaatcgaacatgctaagtttacaaattctaaaatttactaatagatgttcattatattgtataaactagggagtattatgat |
8284223 |
T |
|
| Q |
241 |
atttccataa |
250 |
Q |
| |
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||||| |||| |
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| T |
8284222 |
atttctataa |
8284213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 5768 - 5623
Alignment:
| Q |
5 |
gtatcttcttaatctcatctctacgtggattcgttgtccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtct |
104 |
Q |
| |
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||||||| |||||||||||||| |||||||| |||||||||| ||| | ||| |||||||||||||||||| | ||||| |||||||||| || |
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| T |
5768 |
gtatcttattaatctcatctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggattccatcttgg-ct |
5670 |
T |
|
| Q |
105 |
tggtccaggagttatttcttcatcatctccacctaaaaaatatttgt |
151 |
Q |
| |
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| || || |||| | |||||| |||||||||||||| ||||||||| |
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| T |
5669 |
ttgttgagaagttctctcttcagcatctccacctaaacaatatttgt |
5623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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