View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725_low_1 (Length: 737)

Name: NF5725_low_1
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725_low_1
NF5725_low_1
[»] chr5 (11 HSPs)
chr5 (6-722)||(15807444-15808160)
chr5 (160-345)||(41859542-41859727)
chr5 (149-345)||(42629498-42629694)
chr5 (149-342)||(9575310-9575503)
chr5 (185-346)||(42840417-42840578)
chr5 (166-266)||(1040119-1040219)
chr5 (290-345)||(42637359-42637414)
chr5 (152-258)||(42637224-42637330)
chr5 (650-712)||(15815386-15815451)
chr5 (650-712)||(15831701-15831766)
chr5 (288-345)||(40545121-40545178)
[»] chr8 (2 HSPs)
chr8 (85-342)||(3367655-3367912)
chr8 (13-85)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (367-578)||(25287071-25287282)
chr2 (152-233)||(16921102-16921183)
chr2 (284-345)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (85-345)||(45866864-45867124)
chr7 (292-345)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (493-628)||(17204357-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (290-345)||(10487-10542)
scaffold0129 (251-345)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (250-345)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (290-345)||(5162456-5162511)
chr3 (21-85)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 713; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 6 - 722
Target Start/End: Original strand, 15807444 - 15808160
Alignment:
Q  6 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807444 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 15807543  T
Q  106 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807544 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 15807643  T
Q  206 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807644 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 15807743  T
Q  306 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaatatcaactactactacctatatatttctt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15807744 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaacatcaactactactacctatatatttctt 15807843  T
Q  406 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807844 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 15807943  T
Q  506 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807944 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 15808043  T
Q  606 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808044 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 15808143  T
Q  706 ggaacaacctatgaatt 722  Q
    |||||||||||||||||    
T  15808144 ggaacaacctatgaatt 15808160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 160 - 345
Target Start/End: Original strand, 41859542 - 41859727
Alignment:
Q  160 accaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaatagga 259  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||||  |||||||||||||| | ||| || ||||| || ||||||| || ||||||||||    
T  41859542 accaaggtcttcaattctctgggtgcttaaattaaacaaaactagttcattatcctttttccggaaaaacatatctcctttcttaccaactccaatagga 41859641  T
Q  260 tgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
     | | ||   | | ||| ||||||||||  ||||||||| ||||||||||||| | |||||||||||| |||| |||||| |||||    
T  41859642 cgcttaacatcggacaacggacctacaacgaagagtttgatccatgactctttaatcccaacttcacctaaaactgatatatgaaa 41859727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 149 - 345
Target Start/End: Original strand, 42629498 - 42629694
Alignment:
Q  149 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 248  Q
    |||||||| |||||||||||||| ||| | |||||| |||||| ||| |||||||  |  |||||||||||| | ||| ||||||| || || |||| ||    
T  42629498 tcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccttttttttcaagtatatatcaccatttttaccaa 42629597  T
Q  249 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
     |||||||||||| ||||  |  | ||| ||||| |||||||| |||||| |||||||||| || |  || |||||||||||||||||||| |||||    
T  42629598 ctccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaa 42629694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 149 - 342
Target Start/End: Original strand, 9575310 - 9575503
Alignment:
Q  149 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 248  Q
    ||||||||||||||||||||| | ||| |||||||| |||||| ||||| | |||| | ||||||||||||||| |||||||| || ||||| |||| ||    
T  9575310 tcacctttaacaccaagctctacaattttctgggtgattaaattaaacctagctaattgattatccttttttctaaagaatatgtcaccctttttaccaa 9575409  T
Q  249 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 342  Q
     ||| |||||||| | ||       ||| ||| |||| || |||||||||||||||||||| || |  ||||||| | |||||| |||||||||    
T  9575410 ctcctataggatgcttaacatagaacaacggatctacgatgaagagtttggtccatgactccttcattccaactttatccaaaactgatatgtg 9575503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 346
Target Start/End: Original strand, 42840417 - 42840578
Alignment:
Q  185 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 284  Q
    ||||||||||||||| |||  ||||| || |||||| | |  ||||||| ||||||||| |    |||||| ||||  |||| || ||| || ||||| |    
T  42840417 cttaaatcaaaccaagctagttcattgtctttttttataatcaatatattgcccttcttccctgctccaattggatactcaaggcaaggtaagggaccaa 42840516  T
Q  285 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaat 346  Q
    ||||||||| ||| |||||||| ||||| |  |||| ||||||||||||||| |||||||||    
T  42840517 caataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaat 42840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 1040119 - 1040219
Alignment:
Q  166 ctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttca 265  Q
    |||||| ||||| || |||||||| | |||||||||||| ||||  || |||||||| |||||||||||  |||||||||  | |||||||||||| |||    
T  1040119 ctcttcaattctttgagtgcttaagttaaaccaaactaattcatcgtcgttttttctaaagaatatatcttccttcttaccgactccaataggatgctca 1040218  T
Q  266 a 266  Q
    |    
T  1040219 a 1040219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 42637359 - 42637414
Alignment:
Q  290 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    ||||||||||||||||| || || | ||| ||||||||||||||||||||||||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaa 42637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 42637224 - 42637330
Alignment:
Q  152 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattc 251  Q
    |||||||||||||  | || |||||| || || ||||||| ||| |||||||  |||| ||| |||||||| ||||||||||| || |||||||  | ||    
T  42637224 cctttaacaccaaattgttggattctttgtgtacttaaattaaagcaaactagttcatcatcgttttttctaaagaatatatcaccattcttactcactc 42637323  T
Q  252 caatagg 258  Q
    |||||||    
T  42637324 caatagg 42637330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 712
Target Start/End: Original strand, 15815386 - 15815451
Alignment:
Q  650 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 712  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15815386 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 712
Target Start/End: Original strand, 15831701 - 15831766
Alignment:
Q  650 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 712  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15831701 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15831766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 40545178 - 40545121
Alignment:
Q  288 taaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    |||| |||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  40545178 taaaaagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 40545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 85 - 342
Target Start/End: Original strand, 3367655 - 3367912
Alignment:
Q  85 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 184  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||| ||||    
T  3367655 ctaattgttttttctttcaagcggcagaaggctttccttataaatcattatccggcaacacaagccacctttaacaccaagctcttcaattctctaggtg 3367754  T
Q  185 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 284  Q
    |||||||  || |||| |  ||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||| ||||||||    
T  3367755 cttaaatttaaacaaatttgctcattatctttttttctgaagaatatatcgcccttcttgccaataccaataggatgttcaatgtcacgcataggaccta 3367854  T
Q  285 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 342  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  3367855 caataaagagtttggtccatgactctttgaccccaacttcacctaaaattgatatgtg 3367912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 3367529 - 3367598
Alignment:
Q  13 cagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 85  Q
    |||||| ||||||||||||||| |||||||||||| ||||   |||||||||||| | ||| |||||||||||    
T  3367529 cagataaccaatatcagtaatgatgtattgccatatcatt---atgctcacaaagtaaaaactaaaataaaac 3367598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 9e-69; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 367 - 578
Target Start/End: Original strand, 25287071 - 25287282
Alignment:
Q  367 ttttgataaatatcaactactactacctatatatttcttcagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaa 466  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||    
T  25287071 ttttgataaatatcaactactaccgcctatatatttcttcagtttaattttattacatgactctaatcctattgccttaaacaacaataacacaattcaa 25287170  T
Q  467 tccttcaccaaaaatcaattttcacataaaatccattttcacatgcatcaaccaaccacaacaaatc-taaagttcaaaaaataagacataaaatataac 565  Q
    ||||||| | |||||| ||||||||||||||||||||  ||||| |||||||| |||||||||||||  |||||| |||||| |||||||||| ||||||    
T  25287171 tccttcagcgaaaatcgattttcacataaaatccattaacacatacatcaacc-accacaacaaatcaaaaagttaaaaaaagaagacataaattataac 25287269  T
Q  566 taccttagcatcc 578  Q
    |||||||||||||    
T  25287270 taccttagcatcc 25287282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 16921183 - 16921102
Alignment:
Q  152 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatat 233  Q
    |||||||||||||||||||| ||  | |||||  | ||||||||||| ||||  |||||||| | |||||||||||||||||    
T  16921183 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 16921102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 44937800 - 44937861
Alignment:
Q  284 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    |||| ||||||||| |||||||| ||||| |  || | ||||||||||||||||||||||||    
T  44937800 acaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaa 44937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 85 - 345
Target Start/End: Complemental strand, 45867124 - 45866864
Alignment:
Q  85 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 184  Q
    |||||||||  ||||  ||| |||||||||||||||||||||||  |||||| |||||  ||| | ||||||||||||||||||||| ||| |||| |||    
T  45867124 ctaattgttgattctggcaatcggtagaaggctttccttataaactattatctggcaaagtgaataacctttaacaccaagctcttcaattttctgtgtg 45867025  T
Q  185 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 284  Q
    ||||||| |||  ||||||  |||| ||| | |||||| ||||||||||| ||| |||||| ||||| ||||||||| || |  | || ||||| ||| |    
T  45867024 cttaaattaaatgaaactagttcatcatcttcttttctaaagaatatatcacccgtcttaccaattctaataggatggtcgacacaagacaaagaaccca 45866925  T
Q  285 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    ||||||| |||||| |||||||||| || |  |||| |||||| |||||||||||||||||    
T  45866924 caataaaaagtttgatccatgactccttcactccaatttcacctaaaattgatatgtgaaa 45866864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 345
Target Start/End: Complemental strand, 42446402 - 42446349
Alignment:
Q  292 gagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    ||||||||||||||| || ||||   ||| ||||||||||||||||||||||||    
T  42446402 gagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaa 42446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 493 - 628
Target Start/End: Complemental strand, 17204497 - 17204357
Alignment:
Q  493 taaaatccattttcacatgcatcaaccaaccacaacaaatcta-aagttcaaaaaataagacata-aaat-ataactaccttagcatcctgatcaaa--c 587  Q
    |||||||||||| ||||| |||||||||||||||||||||| | |||||| |||| ||||||||| |||| ||||||||||||||||||||| ||||  |    
T  17204497 taaaatccatttccacatacatcaaccaaccacaacaaatcaacaagttccaaaactaagacatacaaatcataactaccttagcatcctgaccaaactc 17204398  T
Q  588 ctccttaagcatcccaatagaaccaggatcacaagcatcat 628  Q
    || |||||  |||||||||||||||||| ||||| ||||||    
T  17204397 cttcttaaaaatcccaatagaaccaggaccacaaacatcat 17204357  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 10542 - 10487
Alignment:
Q  290 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    |||||||| ||||| ||||| || |  |||||||||||||||||||||||||||||    
T  10542 aagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaa 10487  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 251 - 345
Target Start/End: Original strand, 33521 - 33615
Alignment:
Q  251 ccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    ||||||||||| || |||| ||| ||||| || | |||||||||||| ||||| ||||| || |  |||| |||||||||||| || ||||||||    
T  33521 ccaataggatgctcgatgcaaggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaa 33615  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 29131415 - 29131320
Alignment:
Q  250 tccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    |||||||||| | |||| ||||| ||| || || ||||| ||||  |||||||| || ||||| |  |||| ||||||||||||||||||||||||    
T  29131415 tccaataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaa 29131320  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 5162511 - 5162456
Alignment:
Q  290 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 345  Q
    ||||||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 5162456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 53691573 - 53691512
Alignment:
Q  21 caatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 85  Q
    ||||||||||||||||||||||| ||| || |   |||||||||||| ||||| |||||||||||    
T  53691573 caatatcagtaatggtgtattgcaataccaat---atgctcacaaagtagaaactaaaataaaac 53691512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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