View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725_low_10 (Length: 434)

Name: NF5725_low_10
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725_low_10
NF5725_low_10
[»] chr5 (11 HSPs)
chr5 (17-434)||(10563156-10563573)
chr5 (17-319)||(10764875-10765195)
chr5 (39-434)||(10742365-10742760)
chr5 (17-434)||(10609839-10610256)
chr5 (17-171)||(10748941-10749095)
chr5 (17-165)||(11049804-11049952)
chr5 (257-376)||(10748736-10748855)
chr5 (284-371)||(10218452-10218539)
chr5 (290-371)||(11049641-11049722)
chr5 (44-83)||(10548949-10548988)
chr5 (265-314)||(10718681-10718730)
[»] chr6 (4 HSPs)
chr6 (64-101)||(12930452-12930489)
chr6 (234-319)||(12956424-12956509)
chr6 (58-101)||(12905356-12905399)
chr6 (64-101)||(12956254-12956291)
[»] chr2 (1 HSPs)
chr2 (120-171)||(17925332-17925383)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 10563156 - 10563573
Alignment:
Q  17 gctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563156 gctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttt 10563255  T
Q  117 tggtaacaatttaactggagggatcccttcatccatagggaacctttcatccttagtgcgttttacgtgtgcttctaacaaattaggaggagatgttcca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10563256 tggtaacaatttaactggagggatcccttcatccatagggaacctttcatccttagtgcgttttacgtgtgcttctaacaaattaggaggagatattcca 10563355  T
Q  217 cgtgaagtatgccgcctcaaaaacttgacacttttattgttgggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563356 cgtgaagtatgccgcctcaaaaacttgacacttttattgttgggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaa 10563455  T
Q  317 ttgagctctcactagtcatgaataactttactggctatcttccattcaacatgttcaacaacttccctggtctaactgtttttgaaattggagcaaatca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10563456 ttgagctctcactagtcatgaataactttactggctatcttccatccaacatgttcaacaacttccctggtctaactgtttttgaaattggagcaaatca 10563555  T
Q  417 attctcaggtccaatccc 434  Q
    ||||||||||||||||||    
T  10563556 attctcaggtccaatccc 10563573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 10765195 - 10764875
Alignment:
Q  17 gctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||  ||||||    
T  10765195 gctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaaaccttcattcattcgccctttt 10765096  T
Q  117 tggtaacaatttaactggagggatcccttcatccatagggaacctttcat------------------ccttagtgcgttttacgtgtgcttctaacaaa 198  Q
     ||||||||||||| ||||||||||||||||||| |  |||| |||||||                  ||||| ||||||||||||||||||||||||||    
T  10765095 cggtaacaatttaaatggagggatcccttcatccttcaggaatctttcatccttcaggaatctttcatccttaatgcgttttacgtgtgcttctaacaaa 10764996  T
Q  199 ttaggaggagatgttccacgtgaagtatgccgcctcaaaaacttgacacttttattgttgggtgagaacaaattgtctggtatgattcctccttgtattt 298  Q
    |||||||||||| ||||||  ||| |||| |||||||||||||||||| ||||||  || || |||||||| |||||||||| ||||||  ||||| |||    
T  10764995 ttaggaggagatattccacaagaaatatgtcgcctcaaaaacttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtcttt 10764896  T
Q  299 acaatatgtcatcactaattg 319  Q
    | ||||| |||||||| ||||    
T  10764895 ataatatctcatcacttattg 10764875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 39 - 434
Target Start/End: Complemental strand, 10742760 - 10742365
Alignment:
Q  39 tttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttttggtaacaatttaactggaggg 138  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||| |||||     |||    ||||||||||||||||||     
T  10742760 tttggcagggaacaagttgattggcaaaataccaattgaaattggctatttgaaaaaacttcaatcattgagtgtttggaataacaatttaactggagga 10742661  T
Q  139 atcccttcatccatagggaacctttcatccttagtgcgttttacgtgtgcttctaacaaattaggaggagatgttccacgtgaagtatgccgcctcaaaa 238  Q
    ||| |||||||||||||||| ||||||   ||| ||| |||| ||  | |||| ||||| |||| ||| ||| ||||||  ||| |||| || || ||||    
T  10742660 atctcttcatccatagggaatctttcaagtttaatgcttttttcggttccttcaaacaacttagaaggggatattccacaagaaatatgtcgtctaaaaa 10742561  T
Q  239 acttgacacttttattgttgggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaattgagctctcactagtcatgaa 338  Q
    | |||| |  |||||   ||||||  ||| | |||||||||||| ||||| ||||||||||||||||||||| ||| | |||||| ||||||||||||||    
T  10742560 atttgagaggtttatatatgggtgtaaactatttgtctggtatggttccttcttgtatttacaatatgtcattactgactgagctttcactagtcatgaa 10742461  T
Q  339 taactttactggctatcttccattcaacatgttcaacaacttccctggtctaactgtttttgaaattggagcaaatcaattctcaggtccaatccc 434  Q
    |||||| | ||||| ||||||||| ||||||||| ||||| | ||   ||||| | |||||||| |||||| |||||||||| |||||||||||||    
T  10742460 taacttcaatggctctcttccatttaacatgttccacaacctacccaatctaattatttttgaatttggagtaaatcaattcacaggtccaatccc 10742365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 10609839 - 10610256
Alignment:
Q  17 gctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttt 116  Q
    |||||||||||| ||| ||   ||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| | ||   ||| |||    
T  10609839 gctccaatctcaaagagttacgtttgggaggaaacaatttgattggcaaaataccgattgaaattggctctttgaaaaagcttcaat-atgtgaccattt 10609937  T
Q  117 tg-gtaacaatttaactggagggatcccttcatccatagggaacctttcatccttagtgcgttttacgtgtgcttctaacaaattaggaggagatgttcc 215  Q
     |   ||||| ||||| ||||| || ||||||| | ||||||| ||||||| ||||  ||||||| |   | |||| ||||| |||| ||| ||| ||||    
T  10609938 ggaaaaacaaattaaccggaggaattccttcattcgtagggaatctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattcc 10610037  T
Q  216 acgtgaagtatgccgcctcaaaaacttgacacttttattgttgggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcacta 315  Q
    ||  |||  ||| || |||||||| |||| |  ||||||  ||||||  ||| | |||||||||||||||||| ||||| |||||||||| ||| ||||     
T  10610038 acaagaaacatgtcgtctcaaaaatttgagaggtttatttatgggtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcactt 10610137  T
Q  316 attgagctctcactagtcatgaataactttactggctatcttccattcaacatgttcaacaacttccctggtctaactgtttttgaaattggagcaaatc 415  Q
    | ||| |||||||||  ||||||||  |||| |||||  ||||||  |||||||||  ||| | |||||  ||| |    |||||||  ||||| |||||    
T  10610138 actgaactctcactaaccatgaatagatttaatggctcacttccacccaacatgttttacaccctccctaatctcaaatcttttgaacctggaggaaatc 10610237  T
Q  416 aattctcaggtccaatccc 434  Q
    |||||||||||||||||||    
T  10610238 aattctcaggtccaatccc 10610256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 10749095 - 10748941
Alignment:
Q  17 gctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttt 116  Q
    |||||||||||| || ||| | | |||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||   | |  |  |||     
T  10749095 gctccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaattgaaattggctctttgaaaaagcttcaactaataaatgtttg 10748996  T
Q  117 tggtaacaatttaactggagggatcccttcatccatagggaacctttcatcctta 171  Q
     || |||||||||||||| ||  | ||||||| ||||||||| ||||||||||||    
T  10748995 gggaaacaatttaactggtggatttccttcattcatagggaatctttcatcctta 10748941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 11049952 - 11049804
Alignment:
Q  17 gctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttt 116  Q
    |||||||||| | |||||||  ||||||||||||||| || ||||| || ||||||| ||||||||||||||||||||| ||||| |||||   | |||     
T  11049952 gctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaatgaaattggctctttgaaaaaacttcaatcattggccatttg 11049853  T
Q  117 tggtaacaatttaactggagggatcccttcatccatagggaacctttca 165  Q
        || || ||||||||||| |||||||||| ||||||||| ||||||    
T  11049852 gaaaaataaattaactggaggaatcccttcattcatagggaatctttca 11049804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 10748855 - 10748736
Alignment:
Q  257 tgggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaattgagctctcactagtcatgaataactttactggctatct 356  Q
    ||||||||||||| |||||||||||| ||||| ||||| |||| ||||| |||||||||| | | |||||||||  |   ||||| |||| ||||| |||    
T  10748855 tgggtgagaacaatttgtctggtatgtttccttcttgtctttataatatctcatcactaactcaactctcactaaccgaaaataaatttattggctctct 10748756  T
Q  357 tccattcaacatgttcaaca 376  Q
    ||||| |||| |||||||||    
T  10748755 tccatccaacttgttcaaca 10748736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 10218539 - 10218452
Alignment:
Q  284 ttcctccttgtatttacaatatgtcatcactaattgagctctcactagtcatgaataactttactggctatcttccattcaacatgtt 371  Q
    ||||| ||||| |||||||||| |||||||| ||||||||| |||||   ||||||||||||  ||||| |||||||  |||||||||    
T  10218539 ttccttcttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 10218452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 11049722 - 11049641
Alignment:
Q  290 cttgtatttacaatatgtcatcactaattgagctctcactagtcatgaataactttactggctatcttccattcaacatgtt 371  Q
    ||||| |||||||||| |||||||| ||||||||| |||||   ||||||||||||  ||||| |||||||  |||||||||    
T  11049722 cttgtttttacaatatctcatcacttattgagctcacactaacaatgaataacttttatggctctcttccacccaacatgtt 11049641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 10548949 - 10548988
Alignment:
Q  44 gagggaacaaattgattgggaaaataccaattgaaattgg 83  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  10548949 gagggaacaatttgattggaaaaataccaattgaaattgg 10548988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 10718730 - 10718681
Alignment:
Q  265 aacaaattgtctggtatgattcctccttgtatttacaatatgtcatcact 314  Q
    ||||| ||||||||||| |||||| ||||| |||||||||| ||||||||    
T  10718730 aacaatttgtctggtataattccttcttgtttttacaatatctcatcact 10718681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 12930452 - 12930489
Alignment:
Q  64 aaaataccaattgaaattggctctttgaaaaagcttca 101  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12930452 aaaataccaattgaaattggctctttgaaaaagcttca 12930489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 12956424 - 12956509
Alignment:
Q  234 caaaaacttgacacttttattgttgggtgagaacaaattgtctggtatgattcctccttgtatttacaatatgtcatcactaattg 319  Q
    |||| |||||||| |||||   |||||||||||||| ||||| |||| ||||||| ||||| |||| ||||| |||||||| ||||    
T  12956424 caaacacttgacatttttagctttgggtgagaacaatttgtccggtaagattccttcttgtctttataatatctcatcacttattg 12956509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 12905356 - 12905399
Alignment:
Q  58 attgggaaaataccaattgaaattggctctttgaaaaagcttca 101  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||    
T  12905356 attggtaaaataccaactgaaatcggctctttgaaaaagcttca 12905399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 12956254 - 12956291
Alignment:
Q  64 aaaataccaattgaaattggctctttgaaaaagcttca 101  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  12956254 aaaataccaactgaaatcggctctttgaaaaagcttca 12956291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 17925383 - 17925332
Alignment:
Q  120 taacaatttaactggagggatcccttcatccatagggaacctttcatcctta 171  Q
    |||||||||||||||||| |||||||||| |||||| || ||||||| ||||    
T  17925383 taacaatttaactggaggaatcccttcattcataggaaatctttcatgctta 17925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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