View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5725_low_11 (Length: 416)

Name: NF5725_low_11
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5725_low_11
NF5725_low_11
[»] chr1 (4 HSPs)
chr1 (216-410)||(24574035-24574229)
chr1 (19-115)||(24573838-24573934)
chr1 (216-379)||(28111467-28111634)
chr1 (298-361)||(2758312-2758375)
[»] chr5 (5 HSPs)
chr5 (221-407)||(21178305-21178500)
chr5 (298-374)||(36409766-36409842)
chr5 (236-361)||(25815227-25815357)
chr5 (298-331)||(10912173-10912206)
chr5 (342-398)||(10912200-10912257)
[»] chr2 (1 HSPs)
chr2 (223-407)||(15545084-15545274)
[»] chr3 (3 HSPs)
chr3 (216-353)||(11500468-11500609)
chr3 (216-286)||(36644805-36644875)
chr3 (268-379)||(22516755-22516871)
[»] chr8 (4 HSPs)
chr8 (216-284)||(3693497-3693565)
chr8 (301-372)||(3693426-3693497)
chr8 (216-283)||(18257480-18257547)
chr8 (216-303)||(34108931-34109021)
[»] chr7 (2 HSPs)
chr7 (268-374)||(25032761-25032872)
chr7 (241-303)||(3404023-3404085)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 216 - 410
Target Start/End: Original strand, 24574035 - 24574229
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaagttttgtttacaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574035 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaagttttgtttacaat 24574134  T
Q  316 ttacaaaagaatattattccttaaaaaatattaatttatgattttttgttacaatttcgctcaaactttttaattattgcatgcagtattatcta 410  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||    
T  24574135 ttacaaaagaatattattccttaacaaatattaattcatgatttcttgttacaatttcgctcaaactttttaattattgtatgcaatgttatcta 24574229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 24573838 - 24573934
Alignment:
Q  19 atcatgtacataggatttcatataaatgtagtcttcttggtttggagttagagatggagttagaaggaggaccaacaaagaccacagtctctcccaa 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  24573838 atcatgtacataggatttcatataaatgtagtctttttggtttggagttcgagatggagttagaaggaggaccaacaaagaccacaatctctcccaa 24573934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 216 - 379
Target Start/End: Original strand, 28111467 - 28111634
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaa-----gttttgttt 310  Q
    |||| |||||||||| ||| ||||||||||||||||| ||| |||||| |  || ||||||||| |||||| |||| |||||||||     |||||||||    
T  28111467 actcaatttatttagacttgaacactcaagtttctaagcttgattacactaacttttatttaga-tgcataacaatgaaaaataaagtaaagttttgttt 28111565  T
Q  311 acaatttacaaaagaatattattccttaaaaaatattaatttatgattttttgttacaatttcgctcaa 379  Q
     |||||||||||||||||||| || ||||  |||||||||||||||||  |||||||||||||||||||    
T  28111566 gcaatttacaaaagaatattaatctttaacgaatattaatttatgattccttgttacaatttcgctcaa 28111634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 2758312 - 2758375
Alignment:
Q  298 taaagttttgtttacaatttacaaaagaatattattccttaaaaaatattaatttatgattttt 361  Q
    ||||||||||||| ||||||||||||||| |||| | ||||| |||||| ||||||||||||||    
T  2758312 taaagttttgtttgcaatttacaaaagaacattaattcttaacaaatatcaatttatgattttt 2758375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 221 - 407
Target Start/End: Original strand, 21178305 - 21178500
Alignment:
Q  221 atttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaag-----ttttgtttacaat 315  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    ||||||||| ||||||||| |||| |||| |||||     |||||||| ||||    
T  21178305 atttatttagccttgaacactcaagtttctaaccttaattacaccaactattatttggaatgcataacaatgaaaactaaagtaaaattttgtttgcaat 21178404  T
Q  316 t---tacaaaagaatattattccttaaaaaatattaatttatgattttttgttacaatttcgctcaaactt-tttaattattgcatgcagtattat 407  Q
    |   |||||| |||||||| |||||||  |||||||| ||||||||  |||||||||||||||||||  || |||| |||||||||||||| ||||    
T  21178405 ttactacaaatgaatattaatccttaacgaatattaacttatgattccttgttacaatttcgctcaattttgtttacttattgcatgcagtgttat 21178500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 374
Target Start/End: Original strand, 36409766 - 36409842
Alignment:
Q  298 taaagttttgtttacaatttacaaaagaatattattccttaaaaaatattaatttatgattttttgttacaatttcg 374  Q
    ||||||||||||| ||||||||||||||| |||| |||||||  || || |||||||||||  ||||| ||||||||    
T  36409766 taaagttttgtttgcaatttacaaaagaacattaatccttaacgaaaatcaatttatgattccttgttgcaatttcg 36409842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 25815227 - 25815357
Alignment:
Q  236 aacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaagt-----tttgtttacaatttacaaaagaatatt 330  Q
    |||| |||||||||||| |||||||| | |   ||||||||  | |||||| ||||||||||||||||     ||||||| || |||||||||||| |||    
T  25815227 aacattcaagtttctaaacttaattatactaattattatttttattgcataacaataaaaaataaagtaaaattttgtttgcactttacaaaagaacatt 25815326  T
Q  331 attccttaaaaaatattaatttatgattttt 361  Q
    | |||||||  |||||  |||||||||||||    
T  25815327 aatccttaacgaatatccatttatgattttt 25815357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 10912173 - 10912206
Alignment:
Q  298 taaagttttgtttacaatttacaaaagaatatta 331  Q
    ||||||||||||| ||||||||||||||||||||    
T  10912173 taaagttttgtttgcaatttacaaaagaatatta 10912206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 10912200 - 10912257
Alignment:
Q  342 aatattaatttatgattttttgttacaatttcgctcaaa-ctttttaattattgcatg 398  Q
    |||||||||||||||||  |||||||||||| |||||||  |||||| ||||||||||    
T  10912200 aatattaatttatgattccttgttacaattttgctcaaatttttttacttattgcatg 10912257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 223 - 407
Target Start/End: Complemental strand, 15545274 - 15545084
Alignment:
Q  223 ttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaa-----taaagttttgtttacaattt 317  Q
    ||||||||||||  |||||||||||||||| ||||||||||    ||||||||||||||||||   ||| |||||     |||||||||||||  || ||    
T  15545274 ttatttagccttgtacactcaagtttctaagcttaattacaccaactattatttagaatgcattaaaatgaaaaataaagtaaagttttgtttgaaactt 15545175  T
Q  318 acaaaagaatattattccttaaaaaatattaatttatgattttttgttacaatttcgctcaaact-ttttaattattgcatgcagtattat 407  Q
    |||||||||||||| |||| ||  |||||||||||||||||  || | ||||||||||||||| | || || |||||||||||||| ||||    
T  15545174 acaaaagaatattaatcctgaactaatattaatttatgattccttataacaatttcgctcaaattgttgtacttattgcatgcagtgttat 15545084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 216 - 353
Target Start/End: Original strand, 11500468 - 11500609
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaagt----tttgttta 311  Q
    |||| ||||| |||||||| |||| |||||||||||| |||||||||| |  |||||||||| |||||||| |||| |||||||||||    |||  ||     
T  11500468 actcaatttacttagccttaaacattcaagtttctaagcttaattacactagctattatttataatgcataacaatgaaaaataaagtaaagttttgttg 11500567  T
Q  312 caatttacaaaagaatattattccttaaaaaatattaattta 353  Q
    |||||||||||| || |||| ||||||| |||||| ||||||    
T  11500568 caatttacaaaacaacattaatccttaacaaatatcaattta 11500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 36644875 - 36644805
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgcata 286  Q
    |||| ||||||| |||||| ||||||||||||||||| |||||||||| |  ||||| |||||||||||||    
T  36644875 actcaatttattcagccttgaacactcaagtttctaagcttaattacattaactattgtttagaatgcata 36644805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 22516871 - 22516755
Alignment:
Q  268 ctattatttagaatgcataccaataaaaaataaagt-----tttgtttacaatttacaaaagaatattattccttaaaaaatattaatttatgatttttt 362  Q
    |||||||||||||||||||  ||| |||||||||||     ||||||| |||||  ||||| ||||||| || | ||  |||||||||||||||||  ||    
T  22516871 ctattatttagaatgcataaaaatgaaaaataaagtaaatttttgtttgcaattatcaaaaaaatattaatcatcaacgaatattaatttatgattcctt 22516772  T
Q  363 gttacaatttcgctcaa 379  Q
     ||||||||||| ||||    
T  22516771 tttacaatttcgttcaa 22516755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 3693565 - 3693497
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgca 284  Q
    |||| |||||||||||||| ||||||||||||| ||| |||||||||| |  |||||||||||||||||    
T  3693565 actcaatttatttagccttgaacactcaagtttttaagcttaattacactaactattatttagaatgca 3693497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 3693497 - 3693426
Alignment:
Q  301 agttttgtttacaatttacaaaagaatattattccttaaaaaatattaatttatgattttttgttacaattt 372  Q
    |||||| ||| |||||||||||||||||||| |||||||  |||||||||||||| ||| || |||||||||    
T  3693497 agttttatttgcaatttacaaaagaatattaatccttaacgaatattaatttatgttttctttttacaattt 3693426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 18257480 - 18257547
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattatttagaatgc 283  Q
    |||| |||||||||||||| |||||||||||||||||  ||| ||||| |  ||||||||||||||||    
T  18257480 actcaatttatttagccttgaacactcaagtttctaagtttatttacactaactattatttagaatgc 18257547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 34109021 - 34108931
Alignment:
Q  216 actcgatttatttagccttcaacactcaagtttctaatcttaattacaatgcctattattt---agaatgcataccaataaaaaataaagt 303  Q
    |||| ||||| |||||||| |||| |||| ||||||| ||||||||||||  ||||| |||   | |||||||| |||| |||||||||||    
T  34109021 actcaatttacttagcctttaacattcaattttctaagcttaattacaataactattgtttataataatgcataacaatgaaaaataaagt 34108931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 25032872 - 25032761
Alignment:
Q  268 ctattatttagaatgcataccaataaaaaataaag-----ttttgtttacaatttacaaaagaatattattccttaaaaaatattaatttatgatttttt 362  Q
    |||||||||  |||||||| |||| ||||||||||     |||||||| |||||| |||||||| |||| |||||||  ||||| | |||||||||  ||    
T  25032872 ctattatttttaatgcataacaatgaaaaataaagtaaacttttgtttgcaatttgcaaaagaacattaatccttaacgaatatcagtttatgattcctt 25032773  T
Q  363 gttacaatttcg 374  Q
    ||| ||||||||    
T  25032772 gttgcaatttcg 25032761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 3404023 - 3404085
Alignment:
Q  241 tcaagtttctaatcttaattacaatgcctattatttagaatgcataccaataaaaaataaagt 303  Q
    |||||||||||| |||||||||  |  |||||||||| |||||||| |||| |||||||||||    
T  3404023 tcaagtttctaagcttaattacgctaactattatttataatgcataacaatgaaaaataaagt 3404085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University