View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_low_13 (Length: 412)
Name: NF5725_low_13
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 9085205 - 9085590
Alignment:
| Q |
19 |
agtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaagttactgtatgatatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9085205 |
agtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaagttactgtatgatatta |
9085304 |
T |
|
| Q |
119 |
acaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactagtgcttgttgttaatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9085305 |
acaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactagtgcttgttgttaatta |
9085404 |
T |
|
| Q |
219 |
gttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcaggacgctgtgaagtgaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9085405 |
gttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcaggacgctgcgaagtgaaat |
9085504 |
T |
|
| Q |
319 |
gtgtttcgcgctttacaaccccctatgttgtaaataagtacaaataaaatggagnnnnnnngcatagttagctagaaagaataatc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9085505 |
gtgtttcgcgctttacaaccccctatgttgtaaataagtacaaataaaatggagaaaaaaagcatagttagctagaaagaataatc |
9085590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 9076440 - 9076759
Alignment:
| Q |
19 |
agtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaagttactgtatgatatta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| ||| ||| | ||| |
|
|
| T |
9076440 |
agtagccactgaaaggtgacccttccttccacttttatcaccctgcaacttcatctgcagaatttgaatgtagataaa-tcaagt-actatataacattg |
9076537 |
T |
|
| Q |
119 |
acaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactagtgcttgttgttaatta |
218 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||||| ||| | |||| |||||||| || |||| |||||| |||||||||| |||| |
|
|
| T |
9076538 |
acaatttaaaacttta-atccttctttgcagtgattaatcacacaaatctgatgtct--taacaaatagaaaaatcaagactgttgcttgttgtaaattt |
9076634 |
T |
|
| Q |
219 |
gttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcaggacgctgtgaagtgaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9076635 |
gttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagaaataatttcatttgcaggacgctgtgaagtgaaat |
9076734 |
T |
|
| Q |
319 |
gtgtttcgcgctttacaacccccta |
343 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9076735 |
gtgtttcgcgctttacaacccccta |
9076759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 6416409 - 6416794
Alignment:
| Q |
19 |
agtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaagttactgtatgatatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6416409 |
agtagccactgaaaggtgacccttccttccacttttatcaccctgcagcttcatctgcataattaaaatgtagataaggtcaagttactgtatgatatta |
6416508 |
T |
|
| Q |
119 |
acaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactagtgcttgttgttaatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6416509 |
acaatctaaaacttcggatccttctttacagtgattaatcacacgaatgaaacgtcttataacaaattgagaaatgaagactagtgcttgttgttaatta |
6416608 |
T |
|
| Q |
219 |
gttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcaggacgctgtgaagtgaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6416609 |
gttaccttgtaattgcgcttgtgaacattaaatccgagaggtttggcagcctcctcaatcttagacataatttcatttgcaggacgctgcgaagtgaaat |
6416708 |
T |
|
| Q |
319 |
gtgtttcgcgctttacaaccccctatgttgtaaataagtacaaataaaatggagnnnnnnngcatagttagctagaaagaataatc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6416709 |
gtgtttcgcgctttacaaccccctatgttgtaaataagtacaaataaaatggagaaaaaaagcatagttagctagaaagaataatc |
6416794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University