View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_14 (Length: 411)
Name: NF5725_low_14
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 87 - 405
Target Start/End: Original strand, 23035635 - 23035953
Alignment:
| Q |
87 |
tctttaactacttcatttatcatgtcacacatgtacgaagtacttctcttggactctcattaaatattaccacaatccccaaaagaagtttacgtgtgaa |
186 |
Q |
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| T |
23035635 |
tctttaaccacttcatttatcatgtcacacatgtacgaagtagttttcttggactctcataaaatatttccacaatcccctaaagaagtttacctgtgaa |
23035734 |
T |
|
| Q |
187 |
cctgtaaactaatatagggttttgccgaataatagccaaacacggttaagttgcacaatcttcatttatttggcttctagaaaatatggataagttacac |
286 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23035735 |
cctataaactaatatagggttttgccgaatactagccaaacatggttaagttacacaatcttcatttatttggcttctagaaaatatggataagttacac |
23035834 |
T |
|
| Q |
287 |
aatcttcatttcttttaactcttattgccaaacatagcctacttatttctaccgatcgaaggtatctgttcggtaccctgctaaaaatattacaggtaaa |
386 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23035835 |
aatcttcatttattttaactcttatagccaaacatagcctacttatttctaccgacggaaggtatctgttcggtactctgctaaaaatattacaggtaaa |
23035934 |
T |
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| Q |
387 |
ctgctaaaggcttaatttt |
405 |
Q |
| |
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|||| ||||| |||||||| |
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| T |
23035935 |
ctgccaaaggtttaatttt |
23035953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 262 - 378
Target Start/End: Original strand, 23148399 - 23148515
Alignment:
| Q |
262 |
tctagaaaatatggataagttacacaatcttcatttcttttaactcttattgccaaacatagcctacttatttctaccgatcgaaggtatctgttcggta |
361 |
Q |
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||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||| |||||||| | ||||| | |
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| T |
23148399 |
tctagtaaacatggttaagttgaacaatcttcatttattttaactcttattgccaagcatagcccacttatttcgaccggaagaaggtatgttttcggca |
23148498 |
T |
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| Q |
362 |
ccctgctaaaaatatta |
378 |
Q |
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| |||||||||| |||| |
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| T |
23148499 |
ctctgctaaaaacatta |
23148515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 372
Target Start/End: Original strand, 23145561 - 23145671
Alignment:
| Q |
262 |
tctagaaaatatggataagttacacaatcttcatttcttttaactcttattgccaaacatagcctacttatttctaccgatcgaaggtatctgttcggta |
361 |
Q |
| |
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||||| ||| |||| |||||| |||||||| |||| ||||||||||||| ||||| ||||||| ||||||||| || | |||||||| | ||||| | |
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| T |
23145561 |
tctagtaaacatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggca |
23145660 |
T |
|
| Q |
362 |
ccctgctaaaa |
372 |
Q |
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| ||||||||| |
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| T |
23145661 |
ctctgctaaaa |
23145671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 9639062 - 9639115
Alignment:
| Q |
68 |
ttctatcccttttcctctctctttaactacttcatttatcatgtcacacatgta |
121 |
Q |
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||||||||||||| ||| |||||| | |||||||||||||||||||| ||||| |
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| T |
9639062 |
ttctatccctttttctccctctttgatcacttcatttatcatgtcacatatgta |
9639115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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