View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_17 (Length: 362)
Name: NF5725_low_17
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 12499100 - 12499402
Alignment:
| Q |
22 |
taacataatagctacactaggattttgtatttgagccttttatgcttttggtatattggtgattgtttcatttgtacttcttgtgcaaagaaatagtggt |
121 |
Q |
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| T |
12499100 |
taacataatagctacactaggagtttgtatttgacccttttatgcttttggtatattggtgattgtttcatttgtacttcttgtgcaaagaaatagtggt |
12499199 |
T |
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| Q |
122 |
tgataatattttgcttatttctaaaagaaaaaattgtaggtgttagccactggaacatggatatacaagaaattctcaatatattcaatggaagaaatgt |
221 |
Q |
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| T |
12499200 |
tgataatattttgcttttttctaaaagaaaaaattgtaggtgttagccactggaacatggatatacaagaaattctcaatatattcaatggaagaaatgt |
12499299 |
T |
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| Q |
222 |
atcccaattcaatgacgattcttacgaggtatgttgaattttgtatattattttgggataaattggaatgaatttgtataattactaagtgattttattt |
321 |
Q |
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| T |
12499300 |
atcccaattcaatgacgattcttacgaggtatgttgaattttgtatattattttgggataagttggaatgaatttgtataattactaagtgattttattt |
12499399 |
T |
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| Q |
322 |
tgt |
324 |
Q |
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||| |
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| T |
12499400 |
tgt |
12499402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 15494346 - 15494273
Alignment:
| Q |
161 |
gtgttagccactggaacatggatatacaagaaattctcaatatattcaatggaagaaatgtatcccaattcaat |
234 |
Q |
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| T |
15494346 |
gtgttagccattggaacatggatatacaagaaattctcaatatatttaatgtagaaaatgcatcccaagtcaat |
15494273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 156 - 345
Target Start/End: Original strand, 19064668 - 19064858
Alignment:
| Q |
156 |
tgtaggtgttagccactggaacatggatatacaagaaattctcaatatattcaatggaagaaatgtatcccaattcaatgacgattcttacgaggtatgt |
255 |
Q |
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| T |
19064668 |
tgtaggtgttacccattggaacatggatatacaagaaattctcaatatatttaatgcaaaaaatgtatcccaagtcaatgaggattgttctgaggtatgt |
19064767 |
T |
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| Q |
256 |
tgaattttgtatatt-attttgggataaattggaatgaatttgtataattactaagtgattttattttgtataaatcatgcataaggtttg |
345 |
Q |
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| T |
19064768 |
tgaattttgtatgttaattttgggataagttggaatgagtttgtataattaataagtgattatattttgtataaatgatgtatagggtttg |
19064858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 345
Target Start/End: Complemental strand, 7359041 - 7358851
Alignment:
| Q |
156 |
tgtaggtgttagccactggaacatggatatacaagaaattctcaatatattcaatggaagaaatgtatcccaattcaatgacgattcttacgaggtatgt |
255 |
Q |
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| T |
7359041 |
tgtaggtgttacccattggaacatggatatacaagaaattatcaatatatttaatgcaaaaaatgtatcccaagtcaatgaggattgttctgaggtatgt |
7358942 |
T |
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| Q |
256 |
tgaattttgtatatt-attttgggataaattggaatgaatttgtataattactaagtgattttattttgtataaatcatgcataaggtttg |
345 |
Q |
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| T |
7358941 |
tgaattttgtatgttaattttgggataagttggaatgagtttgtataattaataagtgattatattttgtataaatgatgtatagggtttg |
7358851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 156 - 330
Target Start/End: Original strand, 32403043 - 32403219
Alignment:
| Q |
156 |
tgtaggtgttagccactggaacatggatatacaagaaattctcaatatattcaatggaagaaatgtatcccaattcaatgacgattcttacgaggtatgt |
255 |
Q |
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| T |
32403043 |
tgtaggtgttacccattggaacatggatatacaagaaattatcaatatatttaatgcaaaaaatgtatcccaagtcaatgaggattgttctgaggtatgt |
32403142 |
T |
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| Q |
256 |
tgaattttgtatatt-attttgggataa-attggaatgaatttgtataattactaagtgattttattttgtataaat |
330 |
Q |
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| T |
32403143 |
tgaattttgtatgttaattttgggataagtttggaatgagtttgtataattaatcagtgattatgttttgtataaat |
32403219 |
T |
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