View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_19 (Length: 346)
Name: NF5725_low_19
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 1145721 - 1145548
Alignment:
| Q |
1 |
tgagaaataaattgacacaatttctaaaatagaattttttgagaaagtatattttatttta-tgttttctcaaaagaaatattgtgatttagctttatat |
99 |
Q |
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| T |
1145721 |
tgagaaataagttgacacaatttctaaaatagaattttttgagaaagtatattttattttatttttttctcaaaagaaatattgtgatttagctttatat |
1145622 |
T |
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| Q |
100 |
actatttattattatnnnnnnnnntcaaaaccctagctagtccaattaatttctagattcggaaatgtttgtaatcat |
177 |
Q |
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| T |
1145621 |
actatttattattaaaaaaaag----aaaaccctagctagtccaattaatttctagattcggaaatgtttgtaatcat |
1145548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 1145521 - 1145397
Alignment:
| Q |
205 |
aagattgtgttattcaaatgataggaaacttgcaaggtaatggaagcattgaggtctctacaagatttaaccacaaagttgtgcttttgaaaagtcaaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1145521 |
aagattgtgttattcaaatgataggaaacttgcaatttaatggaagcattgaggtctctacaagatttaaccacaaagttgtgcttttggaaagtcaaaa |
1145422 |
T |
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| Q |
305 |
tgagcagaaagatgatatatctgat |
329 |
Q |
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| T |
1145421 |
tgagcacaaagatgaattatctgat |
1145397 |
T |
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