View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_low_20 (Length: 319)
Name: NF5725_low_20
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 40733242 - 40733525
Alignment:
| Q |
25 |
tcgtatttgaacaacaaacttggttcaaaagattaaagtgttaagtagacttggatctcactctcaaaagttaactcaaataataagaatgtgagtacat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40733242 |
tcgtatttgaacaacaaacttggttcaaaagattaaagtgttaagtagacttgaatctcactctcaaaagttaactcaaataataagaatgtaagtacat |
40733341 |
T |
|
| Q |
125 |
gtatacatccatcattcagataatcatgtcaacgtggaacttcaatacaacttctatacacatcctcacgcccggcctgattcttgtgtctaattaccac |
224 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40733342 |
atatacattcatcattcagataatcatgtcaacgtggaacttcaatacaacttctatacacatcctcacgcccagcctgattcttgtgtctaattaccac |
40733441 |
T |
|
| Q |
225 |
actatcaattcttaattcgattttggtatcatgttaaacaagcatggatttaactctcaagagctagtttaaagaatgatgatg |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40733442 |
actatcaattcttaattcgattctggtatcatgttaaacaagcatggatttaactctcaagagctagtttaaagaatgatgatg |
40733525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University