View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_21 (Length: 307)
Name: NF5725_low_21
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_21 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 307
Target Start/End: Original strand, 39545581 - 39545858
Alignment:
| Q |
30 |
tctctctcgatctgctgttgctgcggttgttgatttgataatgaacatatgctatcagaaagagtactctttctacctataacacaaatttgttgttgct |
129 |
Q |
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| T |
39545581 |
tctctctcgatccgctgttgctgcagttgttgatttgataatgaacatatgctatcagaaagagtactctttctacctataacacaaatttgttgttgct |
39545680 |
T |
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| Q |
130 |
tcttcttttgtctattttaattttaattcatgatgatgatgaaagacaactcaaactctttcatcttctctgcaaattcaatttcaaccaagaaaggttc |
229 |
Q |
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| T |
39545681 |
tcttcttttgtctgttttaattttaattcatgatgatgatgaaagacaactcaaactctttcatcttctctgcaaattcaatttcaaccaagaaaggttc |
39545780 |
T |
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| Q |
230 |
aatggcttgagatgcaactacaacaaccacgaaaagtggaaggggcaaacccgaaaccaccaagtccgtttccagatc |
307 |
Q |
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| T |
39545781 |
aatggcttgagatgcaactacaacaaccaagaaaagtggaaggggcaaacccgaaaccaccaagtccgtttccagatc |
39545858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 32890360 - 32890399
Alignment:
| Q |
186 |
tctttcatcttctctgcaaattcaatttcaaccaagaaag |
225 |
Q |
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| T |
32890360 |
tctttcatcttctctgcaaattcaagttcaaacaagaaag |
32890399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 37368046 - 37367914
Alignment:
| Q |
175 |
acaactcaaactctttcatcttctctgcaaattcaatttcaaccaagaaaggttcaatggcttgagatgcaactacaacaaccacgaaaagtggaagggg |
274 |
Q |
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| T |
37368046 |
acaactcaaactctttcatcttctctgcaaattcaagttcaaacaagaaagtaacaatggcttcagatgcaactgcaacaaccaagaaaggtggaagggg |
37367947 |
T |
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| Q |
275 |
caaacccgaaaccaccaagtccgtttccagatc |
307 |
Q |
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| T |
37367946 |
caaacccataaccaccaagtccgtttccagatc |
37367914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 6615460 - 6615512
Alignment:
| Q |
44 |
ctgttgctgcggttgttgatttgataatgaacatatgctatcagaaagagtac |
96 |
Q |
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| T |
6615460 |
ctgttgttgctgttgttgatttgataataaacacgtgctatcagaaagagtac |
6615512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 47668177 - 47668217
Alignment:
| Q |
131 |
cttcttttgtctattttaattttaattcatgatgatgatga |
171 |
Q |
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| T |
47668177 |
cttcttttttctcttataattttaattcatgatgatgatga |
47668217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 47766395 - 47766337
Alignment:
| Q |
34 |
tctcgatctgctgttgctgcggttgttgatttgataatgaacatatgctatcagaaagagta |
95 |
Q |
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| T |
47766395 |
tctcgatctgctgttgctg---ttgttgatttgataataaacacgtgctatgagaaagagta |
47766337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 47765975 - 47765935
Alignment:
| Q |
131 |
cttcttttgtctattttaattttaattcatgatgatgatga |
171 |
Q |
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| T |
47765975 |
cttcttttttctcttataattttaattcatgatgatgatga |
47765935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 26448176 - 26448213
Alignment:
| Q |
175 |
acaactcaaactctttcatcttctctgcaaattcaatt |
212 |
Q |
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| T |
26448176 |
acaacttaaactctttcatcctctctgcaaattcaatt |
26448213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 18136613 - 18136645
Alignment:
| Q |
84 |
tcagaaagagtactctttctacctataacacaa |
116 |
Q |
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| T |
18136613 |
tcagaaagagtactctttctacctaaaacacaa |
18136645 |
T |
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