View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_27 (Length: 283)
Name: NF5725_low_27
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 44521654 - 44521762
Alignment:
| Q |
164 |
gaagtgtttctgacacttcatcttaactaattattaagtgcatgttaggtgcatgtttggctctatataatagtatctcttttaaattgctcctagctga |
263 |
Q |
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| T |
44521654 |
gaagtgtttctgacacttcatcttaactatttattaagtgcatgttaggtgcatgtttggctctatacagtagtatctcttttaaattgctcctagctga |
44521753 |
T |
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| Q |
264 |
cccattcat |
272 |
Q |
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| T |
44521754 |
cccattcat |
44521762 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 44521507 - 44521600
Alignment:
| Q |
17 |
aaggctccgcccctgataacactcgttgttttatttgataaaattcatataaatttcacctctttatataatctatttgcaaagggtaaacccc |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
44521507 |
aaggctccgtccctgataacactcgttgttttatttgataaaattcatataaatttcacctctttatataatctatttgtaaagtgtaaacccc |
44521600 |
T |
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