View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_28 (Length: 279)
Name: NF5725_low_28
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 2462095 - 2462358
Alignment:
| Q |
1 |
caaaataaagaattggaatagtcacattattaatgtattttgtactatgataaagcgaatttccaaaatggattatgtaagatgtaaatcaaacaaattt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2462095 |
caaaataaagaattggaatagtcatattattaatgtattttgtactatgataaagtgaatttccaaaatggattttgtaagatgtaaatcaaacaaattt |
2462194 |
T |
|
| Q |
101 |
gtgtatcagttagcatacactttaagaaattattcacactttagcacttacaaaagctttaaagaatctgtctcaaattttgtctattcgcaatagctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2462195 |
gtgtatcagttagcatacactttaagaaattattcacactttagcacttacaaaagcttcaaagaatttgtctcaaattttgtctattcacaatagctaa |
2462294 |
T |
|
| Q |
201 |
attaacttctatccgcgctctcaatcctcacctcccttgttacgtgcagcctacgtaccctact |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462295 |
attaacttctatccgcgctctcaatcctcacctcccttgttacgtgcagcctacgtaccctact |
2462358 |
T |
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