View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_29 (Length: 270)
Name: NF5725_low_29
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 3759301 - 3759090
Alignment:
| Q |
19 |
gacactattagtactaatcaataattaactaattaactaacacgagtagttccatacacaggtagctcctcacaatacctactatctccaaacacactca |
118 |
Q |
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| T |
3759301 |
gacactattattactaatcaataattaactaattaactaacacgggtagttccatacacaggaagctcctcacaatacctactatctccaaacacactca |
3759202 |
T |
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| Q |
119 |
aatgatccaactcaaaaagatcagaacttgcacaacttgccacatcatcatcatcttcatcctcttcttcattttgattgatacacaaatcctttaataa |
218 |
Q |
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| T |
3759201 |
aatgatccaactcaaaaagatcagaacttgcacaacttgccacatcatcatcatcttcatcctcttcttcattttgattaatacacaaatcctttaataa |
3759102 |
T |
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| Q |
219 |
aactaaatcgtc |
230 |
Q |
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|||||||||||| |
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| T |
3759101 |
aactaaatcgtc |
3759090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 48345611 - 48345489
Alignment:
| Q |
54 |
actaacacgagtagttccatacacaggtagctcctcacaatacctactatctccaaacacactcaaatgatccaactcaaaaagatcagaacttgcacaa |
153 |
Q |
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||||||| ||||||| || ||||||||| || |||||||||||| || ||| | |||| ||| ||||| | |||||||||||| ||||||| |||| |
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| T |
48345611 |
actaacatgagtagtctcaaacacaggtaaatcttcacaatacctatcatttcccatcacatccaagtgatcaagctcaaaaagatctgaacttgaacaa |
48345512 |
T |
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| Q |
154 |
cttgccacatcatcatcatcttc |
176 |
Q |
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| T |
48345511 |
cttgatacatcatcatcaacttc |
48345489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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