View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_low_3 (Length: 629)
Name: NF5725_low_3
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Complemental strand, 30956164 - 30955553
Alignment:
| Q |
18 |
ctttttgcctgaagaaaaacatgaaatatccaatcaaagtagtttcagaataatatcagcactcctgtgtggtatgccatcaaaactaacgagctcgaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
30956164 |
ctttttgcctgaagaaaaacatgaaatatcgaatcaaagtagtttcagaataatatcagcattcctatgtggcatgccatcaaaactaaggagctcgaga |
30956065 |
T |
|
| Q |
118 |
tattccctattttatagtttaccttattgtaataagtagaactcgggcttgctagattgttgtcgttggggtaaaaaggtgctctcccctcaaaactcgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30956064 |
tattccctattttatagtttaccttattgtaataagtagaactcgggcttgctagattgttgtcgttggggtaaaaaggtgctctcccctcaaaactagc |
30955965 |
T |
|
| Q |
218 |
agattgataaggtcttgaacttgtactgggaaaagatgctgacctataatatggttttgaagtgcccctagatgctgagggtgttgggagggcaactctg |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30955964 |
agattgataaggtcttgaacttgcactgggaaaagatgctgacctataatatggttttgaagtgcccctagatgctgagggtgttgggagggcaactctg |
30955865 |
T |
|
| Q |
318 |
tgaggatatcaacaaatttttgtcagaaatgaacttaacacctcatattttgaatttgaaaaacgcaagagaataatattggaggccattaatcaaaatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30955864 |
tgaggatatcaacaaatttttgtcagaaatgaacttaacacctcatattttgaatttgaaaaacgcaagagaataatattggaggccattaatcaaaatt |
30955765 |
T |
|
| Q |
418 |
ttaccctagtagaccaagctcttttgcggccttatactgaaaaagaatttccctgattgcaagaagaatttccgcctcttttagtgaaggagaaatgttg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30955764 |
ttaccctagtagaccaagctcttttgcggccttatactgaaaaagaatttccctgattgcaagaagaatttccgcctcttttagtgaaggagaaatgttg |
30955665 |
T |
|
| Q |
518 |
tttgactttgacataatttccgtgaaattcacaaactagatgcacaaagagattatgcaatgaattacaattatttacggcatttgaacaactattaata |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
30955664 |
tttgactttgacataatttccgtgaaattcacaaactagatgcacaaagagattatgcaatgaattccaatcatttacggcatttgaacaactattaata |
30955565 |
T |
|
| Q |
618 |
ttcattatctac |
629 |
Q |
| |
|
||||| |||||| |
|
|
| T |
30955564 |
ttcatgatctac |
30955553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 555
Target Start/End: Original strand, 11688901 - 11688933
Alignment:
| Q |
523 |
ctttgacataatttccgtgaaattcacaaacta |
555 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
11688901 |
ctttgacataatctccgtgaaattcacaaacta |
11688933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 569
Target Start/End: Complemental strand, 7474483 - 7474326
Alignment:
| Q |
408 |
aatcaaaattttaccctagtagaccaagctcttttgcggccttatactgaaaaagaatttccctga---ttgcaagaagaatttccgcctcttttagtga |
504 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||||||||||||| || |||||||| | | ||| ||| || | | ||||||||| |||| |
|
|
| T |
7474483 |
aatcaaaattttacccaagtagattaagctctattgcggccttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtga |
7474384 |
T |
|
| Q |
505 |
aggagaaatgttgtttgactttgacataatttccgtgaaattcacaaactagatgcacaaagaga |
569 |
Q |
| |
|
||||| |||||| ||| ||||||| ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
7474383 |
aggaggaatgtt------cttcgacataagttccgtgaaattcacaaacta-aagcacaaagaga |
7474326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University