View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_30 (Length: 252)
Name: NF5725_low_30
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_30 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 21521979 - 21522216
Alignment:
| Q |
15 |
gagtgctaaaagatgggaggttagctgctataaaagttctatcacttgaattccgtctgaatgccgataaattcttgcgcgagattagtgtaatttctga |
114 |
Q |
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| T |
21521979 |
gagtgctaaaagatgggaggttagctgctataaaagttctatcacttgaattccgtctgaatgccgataaattcttgcgcgagattagtgtaatttctga |
21522078 |
T |
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| Q |
115 |
aatccggcatgaaaatttagttgaactatatggttgttgtgtcgaaggaggtcaccgtattttggtctacagttaccttgagaacagtagccttgaacaa |
214 |
Q |
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| T |
21522079 |
aatccagcatgaaaatttagttgaactatatggctgttgtgtcgaaggaggtcaccgtattttggtctacggttaccttgagaacagtagccttgaacac |
21522178 |
T |
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| Q |
215 |
acccttctaggtaaatgtattataattttctttttgat |
252 |
Q |
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| T |
21522179 |
acccttctaggtaaatgtattataattttctttttgat |
21522216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 21527962 - 21528110
Alignment:
| Q |
95 |
gagattagtgtaatttctgaaatccggcatgaaaatttagttgaactatatggttgttgtgtcgaaggaggtcaccgtattttggtctacagttaccttg |
194 |
Q |
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| T |
21527962 |
gagattaatgtgatttcggaaataaagcatgaaaatttggttatactctatggttgctgtgtcgaaggagatcacagaatattagtctacaattacctcg |
21528061 |
T |
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| Q |
195 |
agaacagtagccttgaacaaacccttctaggtaaatgtattataatttt |
243 |
Q |
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| T |
21528062 |
agaacaatagcctttcacaaacccttctaggtaaatgcattatcatttt |
21528110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 21516287 - 21516407
Alignment:
| Q |
126 |
aaaatttagttgaactatatggttgttgtgtcgaaggaggtcaccgtattttggtctacagttaccttgagaaca---gtagccttgaacaaacccttct |
222 |
Q |
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| T |
21516287 |
aaaatatagttgaatcatatagttgttgtgttgaaggagatcacgcgattttggtctgcagttacatcgacaacaacagtagccttgcacatacccttct |
21516386 |
T |
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| Q |
223 |
aggtaaatgtattataatttt |
243 |
Q |
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| T |
21516387 |
aggtaaatgcattatcatttt |
21516407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 32570438 - 32570386
Alignment:
| Q |
179 |
gtctacagttaccttgagaacagtagccttgaacaaacccttctaggtaaatg |
231 |
Q |
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| T |
32570438 |
gtctacaattaccttgagaataatagcctttaacaaactcttctaggtaaatg |
32570386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 1615951 - 1615899
Alignment:
| Q |
179 |
gtctacagttaccttgagaacagtagccttgaacaaacccttctaggtaaatg |
231 |
Q |
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| T |
1615951 |
gtctacaattaccttgagaataatagcctttaacaaactcttctaggtaaatg |
1615899 |
T |
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