View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_32 (Length: 248)
Name: NF5725_low_32
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15049274 - 15049502
Alignment:
| Q |
1 |
aatggctattattacatatttaatttgaaaggactattattgcatattttaaatgttgttattacgtatcataatggctattattgcatatttgaatgat |
100 |
Q |
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| T |
15049274 |
aatggctattattacatatttaatttgaaaggactattattgcatattttaaatgttgttattacatatcataatggctattattgcatatttgaatgat |
15049373 |
T |
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| Q |
101 |
taattaatcattattatctaacaccctttctctcttctcactgtatcggccgctgcctaacttcttatctttgtcgccccttctttccaaattcctttgg |
200 |
Q |
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| T |
15049374 |
taattaatcattattatctaacaccctttctctcttctcactgtatcggccgctgcctaaattcttatctctgtcgccccttctttccaaattcctttgg |
15049473 |
T |
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| Q |
201 |
ttcacaatgtaaacggccgtggtggctga |
229 |
Q |
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| T |
15049474 |
ttcacaatgtaaacggcggtggtggctga |
15049502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 15049202 - 15049294
Alignment:
| Q |
1 |
aatggctattattacatatttaatttgaaaggactattattgcatattttaaatgttgttattacgtatcataatggctattattgcatattt |
93 |
Q |
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| T |
15049202 |
aatggctattgttacatatttaatttgaaaggactattattgcatatttgaaatgttgttattacatatcataatggctattattacatattt |
15049294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 1654282 - 1654217
Alignment:
| Q |
157 |
ctaacttcttatctttgtcgccccttctttccaaattcctttggttcacaatgtaaacggccgtgg |
222 |
Q |
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| T |
1654282 |
ctaactccttatctctgccgccccttctttccaaatttctttggttctcaatgtaaacggcggtgg |
1654217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 26841348 - 26841451
Alignment:
| Q |
125 |
cctttctctcttctcactgtatcggccgctgcctaacttcttatctttgtcgccccttctttccaaattcctttggttcacaatgtaaacggccgtggtg |
224 |
Q |
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| T |
26841348 |
cctttctctcttctcactatatcggccgccatctaacttcttacccccgctgtcccttctttccaaattcttttggttcataatgtaaacg---gtggtg |
26841444 |
T |
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| Q |
225 |
gctgatg |
231 |
Q |
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| T |
26841445 |
gctgatg |
26841451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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