View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_33 (Length: 247)
Name: NF5725_low_33
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28150802 - 28151032
Alignment:
| Q |
1 |
ttatgagtttaacgtcgaaaaagtattaggtgcggaatagaatcatcgatgtaacaaaacaaaa-gttatatataatcaaacaaatcaagtatttacatc |
99 |
Q |
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| T |
28150802 |
ttatgagtttaacgtcgaaaaagtattaggtgcggaatagaatcatcgatgtaacataacaaaaagttatatataatcaaacaaatcaagtatttacatc |
28150901 |
T |
|
| Q |
100 |
aaaatcgtaacaaattacatcgaatcacccagcacaatgggagtttagttacacattatcatgatagcttacatgaaaagatataaatgagatgatgttg |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28150902 |
aaaatcgtaacaaattacatcgaatctcccagcacaatgggagtttagttacacattatcatgatagcttacatgaaaagatataaatgagatgatgttg |
28151001 |
T |
|
| Q |
200 |
tatcaaatgcttgaagcttaaagatccaatg |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28151002 |
tatcaaatgcttgaagcttaaagatccaatg |
28151032 |
T |
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