View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_35 (Length: 246)
Name: NF5725_low_35
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 3401391 - 3401174
Alignment:
| Q |
11 |
gaagaatatggtattcacttttgaacaaaagaaacgagtactgatgtttattattaacagaatagaagaataaagaagagtaccctatatatagattcag |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3401391 |
gaagaaaatggtattcacttttgaacaaaagaaacgagtactgatgtttattattaacagaatagaagaataaagaagagtaccctatatatagattcag |
3401292 |
T |
|
| Q |
111 |
gtgctgaaaaaagaaactaactaacataaccaacaaacttgtaataaagtaactgtctaactgatcagtaacaacctctaacgattttaacacactaacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3401291 |
gtgctgaaaaaagaaactaactaacataaccaacaaacttgtaataaagtaactgtctaactgatcagtaacaacctctaacgattttaacacactaacc |
3401192 |
T |
|
| Q |
211 |
aagaggtagataaataag |
228 |
Q |
| |
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|||||||||||||||||| |
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| T |
3401191 |
aagaggtagataaataag |
3401174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 3376327 - 3376110
Alignment:
| Q |
11 |
gaagaatatggtattcacttttgaacaaaagaaacgagtactgatgtttattattaacagaatagaagaataaagaagagtaccctatatatagattcag |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3376327 |
gaagaaaatggtattcacttttgaacaaaagaaacgagtactgatgtttattattaacagaatagaagaataaagaagagtaccctatatatagattcag |
3376228 |
T |
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| Q |
111 |
gtgctgaaaaaagaaactaactaacataaccaacaaacttgtaataaagtaactgtctaactgatcagtaacaacctctaacgattttaacacactaacc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3376227 |
gtgctgaaaaaagaaactaactaacataaccaacaaacttgtaataaagtaactgtctaactgatcagtaacaacctctaacgattttaacacactagcc |
3376128 |
T |
|
| Q |
211 |
aagaggtagataaataag |
228 |
Q |
| |
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|||||||||||||||||| |
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| T |
3376127 |
aagaggtagataaataag |
3376110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 3396199 - 3396002
Alignment:
| Q |
12 |
aagaatatggtattcacttttgaacaaaagaaacgagtactgatgtttattattaacagaatagaagaataaagaagagtaccctatatataga--ttca |
109 |
Q |
| |
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||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| |||||||||||||| |||||||| | |||| |
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| T |
3396199 |
aagaaaatggtattcacttttgaacaagagaaatgagtactgatctttattattaaccgaatagag---taaagaagagtaccttatatatataggttca |
3396103 |
T |
|
| Q |
110 |
ggtgctgaaaaaagaaact-aactaacataaccaacaaacttgtaataaagtaactgtctaactgatcagtaacaacctctaacgattttaacacactaa |
208 |
Q |
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||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
3396102 |
ggtgctgaaaaaagaaacttaactaacaaaactaacaaactttaattaaagtgactgtctaactgatcagtaactacctctaactattttaacacactaa |
3396003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 3371773 - 3371641
Alignment:
| Q |
80 |
ataaagaagagtaccctatatataga--ttcaggtgctgaaaaaagaaact-aactaacataaccaacaaacttgtaataaagtaactgtctaactgatc |
176 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| |||||||||||||| |
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| T |
3371773 |
ataaagaagagtaccttatatatataggttcaggtgctgaaaaaagaaacttaactaacaaaactaacaaactttaattaaagtgactgtctaactgatt |
3371674 |
T |
|
| Q |
177 |
agtaacaacctctaacgattttaacacactaac |
209 |
Q |
| |
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|||||| ||||||||| |||||||||||||||| |
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| T |
3371673 |
agtaactacctctaactattttaacacactaac |
3371641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 3367637 - 3367598
Alignment:
| Q |
153 |
aataaagtaactgtctaactgatcagtaacaacctctaac |
192 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||| |
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| T |
3367637 |
aataaagtaactgcctaagtgatcagtaacaacctctaac |
3367598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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