View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_36 (Length: 245)
Name: NF5725_low_36
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 21522237 - 21522468
Alignment:
| Q |
1 |
tgagaacaatgtacattttatttcatcaaaatatacttcatgaacttaatgatgaagtctttgattctcaacctcatactgcaggtgaaggtgtcagcaa |
100 |
Q |
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| T |
21522237 |
tgagaacaatgtacattttatttcatcaaaatatacttcatgaacttaatgcagaaacctttgattttcaaccccatattgcaggtgaaggtgtcagcaa |
21522336 |
T |
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| Q |
101 |
tatcaaatttaactggcaagcacggtgtaggatatgcatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcatagg |
200 |
Q |
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| T |
21522337 |
tatcaaatttaactggcaagcacggtgtaggatatgtatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcacagg |
21522436 |
T |
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| Q |
201 |
gatatacgagcaagcaatatagtccttgatga |
232 |
Q |
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| T |
21522437 |
gatatacgagcaagcaatatagtcctcgatga |
21522468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 21528249 - 21528355
Alignment:
| Q |
114 |
tggcaagcacggtgtaggatatgcatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcatagggatatacgagcaa |
213 |
Q |
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|||||| |||| ||||||||||| | ||||||||||||||||||| ||||| ||||| ||| || ||| ||| |||||| ||||||||| ||||| |
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| T |
21528249 |
tggcaaacacgacgtaggatatgccttggagttgcacgtggacttgcctttctccatgaggaagtactgccacatattgttcacagggatataaaagcaa |
21528348 |
T |
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| Q |
214 |
gcaatat |
220 |
Q |
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||||||| |
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| T |
21528349 |
gcaatat |
21528355 |
T |
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