View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_38 (Length: 238)
Name: NF5725_low_38
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 242415 - 242635
Alignment:
| Q |
18 |
atgtttatcatttctagtggtacacattctacaattagactctgatgatagagagacactctcaattcattactctatgtttacacaattttaattgagt |
117 |
Q |
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| T |
242415 |
atgtttatcatttgtagtggtacacattctacaattagactctgatgatagagagacactgtcaattcaatactctatgtttacacaattttaattgagt |
242514 |
T |
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| Q |
118 |
ttaaatgcaaacatactaatacccagggtcgttaaatagttttgctatatagcagaatttcatcaagctgttgttttctgcaatttgcgattgacaacat |
217 |
Q |
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| T |
242515 |
ttaaatgcaaacatactaatacacagcgtcgttaaatagttttgctatatagcagaatttcatcaagctgttgttttctgcaatttgcgattgacaacat |
242614 |
T |
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| Q |
218 |
tactacatatctttttattac |
238 |
Q |
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| T |
242615 |
tactacatatctttttattac |
242635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 6908119 - 6908265
Alignment:
| Q |
79 |
tcaattcattactctatgtttacac-aattttaattgagtttaaatg-caaacatactaatacccagggtcgttaaatagtttt-gctatatagcagaat |
175 |
Q |
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|||||||| |||||||| ||||||| || ||||||||||||||| || ||||||||||||||| || |||||||||||||||| |||||| |||||||| |
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| T |
6908119 |
tcaattcaatactctatatttacactaaatttaattgagtttaagtgtcaaacatactaatactaagtgtcgttaaatagtttttgctatacagcagaat |
6908218 |
T |
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| Q |
176 |
ttcatcaagctgttgttttctgcaatttgcgattgacaacattacta |
222 |
Q |
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| T |
6908219 |
ttgatcaagctgttgttttctgcaatttgcgatcgacaacactacta |
6908265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 6927141 - 6927248
Alignment:
| Q |
34 |
gtggtacacattctacaattagactctgatgatagagagacactctcaattcattactctatgtttacac---aattttaattgagtttaaatgcaaaca |
130 |
Q |
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|||||||||||||||||||||||||||||||| || |||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6927141 |
gtggtacacattctacaattagactctgatgagag-gagatactgtcaattccatactctatgtttacactaaaattttaattgagtttaaatgcaaaca |
6927239 |
T |
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| Q |
131 |
tactaatac |
139 |
Q |
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| T |
6927240 |
tcctaatac |
6927248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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