View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5725_low_4 (Length: 618)
Name: NF5725_low_4
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 20 - 608
Target Start/End: Original strand, 8028712 - 8029300
Alignment:
| Q |
20 |
tactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggtaaaatatcacacgtaaaatatcaattcatattacaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8028712 |
tactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggtaaaatatcacacgtaaaatatcaattcatattacaaaat |
8028811 |
T |
|
| Q |
120 |
ttagacaacatatatataagttataacactgtattttactatatttgtcttacgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8028812 |
ttagacaacatatatataagttataacactgtattttactatatttgttttacgacgaaaattttatatggtacagaaaaaggttatttctttgacaaaa |
8028911 |
T |
|
| Q |
220 |
gaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8028912 |
gaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgggccaaacactttgt |
8029011 |
T |
|
| Q |
320 |
ttgtgatatctgaagttatcaaattagtaaagaaactttgccaagaacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaa |
419 |
Q |
| |
|
| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8029012 |
tggtgatatctgaagttatcaaattagttgataaactttgccaagaacataatcacgagtctccagaataccaagtcttcatgaatgatcttcaagggaa |
8029111 |
T |
|
| Q |
420 |
tgatttcaacaatatttttaggttacttgataggttcacagagaaactaaatgatgaagtggaagatgggattggtggtccaatctttttctatggggct |
519 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8029112 |
tgatttcaacaacatttttaggttacttgataggttcacagagaaactaaatgatgaagtggaagatgggattggtggtccaatctttttctatggggct |
8029211 |
T |
|
| Q |
520 |
cctggttctttttatggcagaatttttccaacaaaaacaatgcatttcattcattcctcttacagccttcaatggctctcacaggttct |
608 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8029212 |
cctggttctttttatggcaggatttttccaacaaaaacaatgcatttcattcattcctcttacagccttcaatggctctcacaggttct |
8029300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 7298245 - 7298122
Alignment:
| Q |
206 |
tttctttgacaaaagaaatgagagatgaagccataaagaacctctactgcaaaacgttcccaaaaaggctaggtattgcagatttgggttgttcttctgg |
305 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| | |||||||| |||||| | ||||| || | ||||||||||| |||||||||||||| |
|
|
| T |
7298245 |
tttctttgacaaagccaataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctgg |
7298146 |
T |
|
| Q |
306 |
gccaaacactttgtttgtgatatc |
329 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
7298145 |
accaaacactttgtttgtggtatc |
7298122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 32709950 - 32709889
Alignment:
| Q |
280 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
341 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||| |
|
|
| T |
32709950 |
attgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaa |
32709889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 32629115 - 32629054
Alignment:
| Q |
20 |
tactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
81 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
|
|
| T |
32629115 |
tactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
32629054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 32710169 - 32710113
Alignment:
| Q |
25 |
cacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
81 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| |
|
|
| T |
32710169 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggta |
32710113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 32704240 - 32704200
Alignment:
| Q |
280 |
attgcagatttgggttgttcttctgggccaaacactttgtt |
320 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
32704240 |
attgcagatttgggttgctcttatggaccaaacactttgtt |
32704200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 27736976 - 27736914
Alignment:
| Q |
280 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaaa |
342 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||| |||| |||||||| ||| |||||||| |
|
|
| T |
27736976 |
attgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaa |
27736914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Complemental strand, 27736751 - 27736710
Alignment:
| Q |
508 |
ttctatggggctcctggttctttttatggcagaatttttcca |
549 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
27736751 |
ttctatggagttcctggttcattttatggcagaatttttcca |
27736710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 27737676 - 27737620
Alignment:
| Q |
25 |
cacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
81 |
Q |
| |
|
|||||||||||| | ||| |||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
27737676 |
cacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggta |
27737620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 5811657 - 5811596
Alignment:
| Q |
280 |
attgcagatttgggttgttcttctgggccaaacactttgtttgtgatatctgaagttatcaa |
341 |
Q |
| |
|
|||||||| |||||||| |||| ||| ||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
5811657 |
attgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaa |
5811596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University