View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_7 (Length: 478)
Name: NF5725_low_7
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 4 - 401
Target Start/End: Complemental strand, 34678211 - 34677814
Alignment:
| Q |
4 |
gactgacaaaagtgaaaggatcaagagaaagaaacagaaaacgctgtgagcatttagctctctctactgtttcactctcagattataaacaaaagagtac |
103 |
Q |
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| T |
34678211 |
gactgacaaaagtgaaaggatcaagagaaagaaacagaaaacgctgtgagcatttagctctctctactgtttcactctcagattataaacaaaagagtac |
34678112 |
T |
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| Q |
104 |
atcacatgaatgttcatatacaagactcatcaaatcatcgtagaaaataaggattatttcatgatgtgatcgatgattcaattgcacacaagttaaacag |
203 |
Q |
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| T |
34678111 |
atcacatgaatgttcatatacaagagtcatcaaatcatcgtagaaaataaggattatttcatgatgtgatcgatgattcaattgcacacaagttaaacag |
34678012 |
T |
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| Q |
204 |
tttaacttgaagattcataagtcataacactacgtatagttccatctagaataatcaaaataacggcttagctttttgttgttctgttttcatgaaaatg |
303 |
Q |
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| T |
34678011 |
tttaacttgaagattcataagtcataacactacgtatagttccacctagaataatcaaaataacggcttagctttttgttgttctgttttcatgaaaatg |
34677912 |
T |
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| Q |
304 |
aaaggctaacttcactgttagtattttctcttctggaaacatggagagcaaatgcagctgaacatgtagcttagaaaacactgctatagtttcttcta |
401 |
Q |
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| T |
34677911 |
aaaggctaacttcactgttagtattttctcttctggaaacatggagagcaaatgcagctgaacatgtagcttagaaaactctgctatagtttcttcta |
34677814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 34677780 - 34677735
Alignment:
| Q |
424 |
attctaatcatagataaaacaaccctaactctcctattagtattat |
469 |
Q |
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| T |
34677780 |
attctaatcatagataaaacaaccctaactctcctattagtattat |
34677735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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