View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5725_low_8 (Length: 457)
Name: NF5725_low_8
Description: NF5725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5725_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 26 - 446
Target Start/End: Complemental strand, 34093564 - 34093144
Alignment:
| Q |
26 |
tgatgtgatgtgatgatgttaatgcaataaatggtagtaaaaatttgaaggatctttgataaaattttcactctatgattttacatgtcgacatgatggt |
125 |
Q |
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| T |
34093564 |
tgatgtgatgtgatgatgttaatgcaataaatggtagtaaaaatttgaaggatctttgataaaattttcactctatgattttacttgtcgacatgatggt |
34093465 |
T |
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| Q |
126 |
aatgctgctgcttccattgtggttatctgttagcactggtagt---gacatgtttgccataatgaagtattattatattaattaatagcactttcttaat |
222 |
Q |
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| T |
34093464 |
aatgctgct---tccattgtggttatctgttagcactggtagtagtgacatgtttgccataatgaagtattattatattaattaatagcactttcttaat |
34093368 |
T |
|
| Q |
223 |
atagggttattgtcttttttccattttctcgtggctcatgaattttagtagaatcaatttttctggtattggaatatgccaaagtagaagtcatgtcaca |
322 |
Q |
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| T |
34093367 |
atagggttattgtcttttttccattttctcgtggctcatgaattttagtagaatcaatttttctggtattggaatatgccaaagtagaagtcatgtcaca |
34093268 |
T |
|
| Q |
323 |
ttgacatacatacacatatcagaattgcactctgcacctaaaactatgcatggttaccttttcggctactctcagtgctactgagatttgatataagata |
422 |
Q |
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| T |
34093267 |
ttgacatacatacacatatcagaattgcactctgcacctaaaactatgcatggttaccttttcggctactcgcagtgctactgagatttgatataagata |
34093168 |
T |
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| Q |
423 |
gcaaagttttgattttggagtatt |
446 |
Q |
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| T |
34093167 |
gcaaagttttgattttggagtatt |
34093144 |
T |
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