View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726-Insertion-2 (Length: 435)
Name: NF5726-Insertion-2
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 1402839 - 1403227
Alignment:
| Q |
8 |
catctgattcaatcactactacatctacatgcacctacgcaagcaacagtataacaatgtagattagatcgtatactatagtgcattaattattgtaatt |
107 |
Q |
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| T |
1402839 |
catctgattcaatcactactacatctacatgcacctacgcaagcaatagtataacaatgtagattagatcctatactatagtgcattaattattgtaatt |
1402938 |
T |
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| Q |
108 |
aatctccattaacaataatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaag |
207 |
Q |
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| T |
1402939 |
aatctccattaacaacaatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaag |
1403038 |
T |
|
| Q |
208 |
cagttgctacatcattacgcacttgtgaaagaggtagcacttctcccactggaaaaaccaaaattttgaactatcatattcaaattgctgaaccttgtac |
307 |
Q |
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| T |
1403039 |
cagttgctacatcattacgcacttgtgaaagaggtagcacttctcccactggaaaaacaaaaattttgaactatcatattcaaattgctgaaccttgtac |
1403138 |
T |
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| Q |
308 |
tctcannnnnnnattgtttctctcagcttatagaaaagaatgaataactgtttagtccttgcaatatgtatcttttccgggtttagtccc |
397 |
Q |
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| T |
1403139 |
tctca-ttttttattgtttctctcagcttatagaaaagaatgaagaactgtttagtccttgcaatatgtatcttttccggatttagtccc |
1403227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 1403239 - 1403294
Alignment:
| Q |
380 |
ttttccgggtttagtcccccaaaacattggaaaaagttggttttcgtcttgttgtt |
435 |
Q |
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| T |
1403239 |
tttttcgggtttagtcccccaaaacattggaaaaagttggttttcgtcttgttgtt |
1403294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 1409764 - 1409918
Alignment:
| Q |
83 |
ctatagtgcattaattattgtaattaatctccattaacaataatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtt |
182 |
Q |
| |
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|||||||||| || || || ||||||||| ||| || || ||| | | ||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
1409764 |
ctatagtgcactatttgttcaaattaatcttcatgaagaacaatatcttacctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtc |
1409863 |
T |
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| Q |
183 |
tgccactccacttcccttttgaaagcagttgctacatcattacgcacttgtgaaa |
237 |
Q |
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| T |
1409864 |
tcacactctatttcttttttgtacgcagctgctacatcgtcacgcacttgtgaaa |
1409918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 40682213 - 40682087
Alignment:
| Q |
134 |
ctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcacttgt |
233 |
Q |
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|||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||| |
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| T |
40682213 |
ctttctttgctcacacaaacttttaaaaggtagaagcattagattt-tttgccactccacttacctttcgaaagcaattgctacatcattacacacttgt |
40682115 |
T |
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| Q |
234 |
gaaagaggtagcacttctcccactggaa |
261 |
Q |
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| T |
40682114 |
gaaagagggagcacatcttccattggaa |
40682087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 4488491 - 4488596
Alignment:
| Q |
132 |
acctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcactt |
231 |
Q |
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||||||||||||||||||| ||||||| ||||||| |||||||||||| | | |||| | |||| ||||| | | || ||| ||||||| || ||||| |
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| T |
4488491 |
acctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaacatcatcacacactt |
4488590 |
T |
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| Q |
232 |
gtgaaa |
237 |
Q |
| |
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|||||| |
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|
| T |
4488591 |
gtgaaa |
4488596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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