View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_high_10 (Length: 348)

Name: NF5726_high_10
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_high_10
NF5726_high_10
[»] chr2 (1 HSPs)
chr2 (14-313)||(3487869-3488168)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 3487869 - 3488168
Alignment:
Q  14 atatagataagtgaaaaataaaatatcacttctgaatctgacctacatacatattnnnnnnnntaagaaagacattatgattgagatacgttcccttttc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  3487869 atatagataagtgaaaaataaaatatcacttctgaatctgacctacatacatattaaaaaaaataagaaagacattatgattgagatacgttcccttttc 3487968  T
Q  114 atgattatctctattattccttatttggattggatagtatttcccttttccacgtcaccactctcactcgctttcttctagtcnnnnnnnnnnnnngact 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||             ||||    
T  3487969 atgattatctctattattccttatttggattggataggatttcccttttccacgtcaccactctcactcgctttcttctagtcaaaaaaccaaaaagact 3488068  T
Q  214 gaaacaccctttctattttcatctatatatatcttataccattccctcattcttctcatcattatccattttcttcaatctccaattcttggtattttca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3488069 gaaacaccctttctattttcatctatatatatcttataccattccctcattcttctcatcattatccattttcttcaatctccaattcttggtatgttca 3488168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University