View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_high_14 (Length: 269)
Name: NF5726_high_14
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_high_14 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 6152509 - 6152266
Alignment:
| Q |
19 |
tccaattcattgcaatattaaatttccacatgcatgcatatagcaacacactatatataactacaaattaaatgtgatcacttattaatttttactaaag |
118 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
6152509 |
tccaattcattgtaatattaaatttccacatgcatacatatagcaacacactatatataattacaaattaaatgttatcacttattaattttgactaaag |
6152410 |
T |
|
| Q |
119 |
tttacttacggtaaataaatcgagcaaatatgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6152409 |
tttacttacggtaaataaatcgagcaaatatgaaaataaagcacatctttaaccgtgaattcatttatactaatatcaaccaaagttaatattaacaagt |
6152310 |
T |
|
| Q |
218 |
atttaagaaagtatatatacctcaatcctgagcctgttcatctc |
261 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6152309 |
aattaagaaagtatatatacctcaatcctgagcctgttcctctc |
6152266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 34284103 - 34283872
Alignment:
| Q |
22 |
aattcattgcaatattaaatttccacatgcatgcatatagcaacacactatatataactacaaattaaatgtgatcacttattaatttttactaaagttt |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||| || |||| || |||||| |||||||||||| |||||||||||||||| |||||||||| |
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| T |
34284103 |
aattcattgcaatattaaatttccacatgcatacctatagtaatacacaatgtataaccacaaattaaatgctatcacttattaattttgactaaagttt |
34284004 |
T |
|
| Q |
122 |
acttac-ggtaaataaatcgagcaaatatgaaaataaagcacatctttaaccgtgaattcatttatactaa--ttcaaccaaagttaatattaacaagta |
218 |
Q |
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|||| | |||||||||||| | | || ||||||| |||||||| ||||| |||||||||||||| |||| |||||||||| |||||||||| ||||| |
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| T |
34284003 |
acttgctggtaaataaatccaaaatatttgaaaatgaagcacattattaacggtgaattcatttattctaatcttcaaccaaatttaatattaataagta |
34283904 |
T |
|
| Q |
219 |
tttaagaaagtatatatacctcaatcctgagc |
250 |
Q |
| |
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||||||||| ||||||||||||| ||||||| |
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| T |
34283903 |
attaagaaagcatatatacctcaaccctgagc |
34283872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 33802192 - 33802413
Alignment:
| Q |
19 |
tccaattcattgcaatattaaatttccacatgcatgcatatagcaacacactatatataactacaaattaaatgtgatcacttattaatttttactaaag |
118 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
33802192 |
tccaattcattgcaatattaaattttcacatgcatacttatagtaacacataatatataaccacaaattaaatactatcacttattaattttgactaaag |
33802291 |
T |
|
| Q |
119 |
tttactt-acggtaaataaatcgagcaaatatgaaaataaagcaca-tctttaaccgtgaattcatttatacta--attcaaccaaagttaatattaaca |
214 |
Q |
| |
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||||||| | |||||||||||| | | || ||||||| ||||||| | ||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
33802292 |
tttacttgatggtaaataaatctaaaatatttgaaaatgaagcacattatttaattgtgaattcatttattttagtcttcaaccaaagttaatattaaca |
33802391 |
T |
|
| Q |
215 |
agtatttaagaaagtatatata |
236 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
33802392 |
agtaattaagaaagtatatata |
33802413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 33730847 - 33731068
Alignment:
| Q |
19 |
tccaattcattgcaatattaaatttccacatgcatgcatatagcaacacactatatataactacaaattaaatgtg-atcacttattaatttttactaaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||| ||||||||||| |||||||||||||||| |||||| |
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| T |
33730847 |
tccaattcattgcaatattaaatttccacatgcatacttatagtaacacataatatataaccacaaattaaattactatcacttattaattttgactaaa |
33730946 |
T |
|
| Q |
118 |
gtttactt-acggtaaataaatcgagcaaatatgaaaataaagcaca-tctttaaccgtgaattcatttatacta--attcaaccaaagttaatattaac |
213 |
Q |
| |
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|||||||| | |||||||||||| | | || ||||||| ||||||| | ||||| |||||||||||||| || ||||||||||||||||||| || |
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| T |
33730947 |
gtttacttgatggtaaataaatctaaaatatttgaaaatgaagcacattatttaattgtgaattcatttattttagtcttcaaccaaagttaatatt-ac |
33731045 |
T |
|
| Q |
214 |
aagtatttaagaaagtatatata |
236 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
33731046 |
aagtaattaagaaagtatatata |
33731068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 34282491 - 34282732
Alignment:
| Q |
19 |
tccaattcattgcaatattaaatttccacatgcatgcatatagcaa-------cacactatatataactacaaattaaatgtgatcacttattaattttt |
111 |
Q |
| |
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||||||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||| ||| |||||| || |||| |||||||| |
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| T |
34282491 |
tccaattcatttttatgttaaatttccacatgcatacttatagcaattagtaacacactatatataactaaaaagtaaatgctattacttgttaattttg |
34282590 |
T |
|
| Q |
112 |
actaaagtttacttacggtaaataaatcgagcaaatatgaaaataaagcacatctttaaccgtgaattcatttatacta--attcaaccaaagttaatat |
209 |
Q |
| |
|
||||||||||||||| |||||||||||| | | || ||||||| ||||||| ||||| |||||||||||||| ||| |||||||||| |||||||| |
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| T |
34282591 |
actaaagtttacttatggtaaataaatccaaaatatttgaaaatggagcacattattaacggtgaattcatttattctaatattcaaccaatgttaatat |
34282690 |
T |
|
| Q |
210 |
taacaagtatttaagaaagtatatatacctcaatcctgagcc |
251 |
Q |
| |
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||||||||| ||||||||| || |||||| ||| |||||||| |
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| T |
34282691 |
taacaagtaattaagaaagaatttataccccaaccctgagcc |
34282732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 6146214 - 6146080
Alignment:
| Q |
128 |
ggtaaataaatcgagcaaatatgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagtatttaagaa |
226 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||| |||||| | |||| |
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|
| T |
6146214 |
ggtaaataaatcgagaaaatttgaaaatgaagcacatctttaaacatgaattcatttatactaatatcaaccaaagtcaatattatcaagtaacttagaa |
6146115 |
T |
|
| Q |
227 |
agtatatatacctcaatcctgagcctgttcatctc |
261 |
Q |
| |
|
||||||| |||||||| |||| |||||||| |||| |
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|
| T |
6146114 |
agtatatgtacctcaaccctgtgcctgttcctctc |
6146080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 6126798 - 6126664
Alignment:
| Q |
128 |
ggtaaataaatcgagcaaatatgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagtatttaagaa |
226 |
Q |
| |
|
|||||||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||||| |||||| |
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| T |
6126798 |
ggtaaataaatcgataacatttgaaaacgaagcacatctttaaccatgaattcatttatactaataccaaacaaagttaatattatcaagtaactaagaa |
6126699 |
T |
|
| Q |
227 |
agtatatatacctcaatcctgagcctgttcatctc |
261 |
Q |
| |
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|||||||||||||||| | ||||| ||||| |||| |
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|
| T |
6126698 |
agtatatatacctcaaccatgagcatgttcctctc |
6126664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 6127060 - 6126988
Alignment:
| Q |
21 |
caattcattgcaatattaa----atttccacatgcatgcatatagcaacacactatatataactacaaattaaat |
91 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |||||||| ||||| ||||||||||||||| |
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|
| T |
6127060 |
caattcattgcaatattaattaaatttccacatgcatacata--gcaacacatcatatagaactacaaattaaat |
6126988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 7640 - 7710
Alignment:
| Q |
19 |
tccaattcattgcaatattaaatttccacatgcatgcatatagcaacacactatatataactacaaattaaat |
91 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||| ||||| ||||||||| ||||||| |||||||||||| |
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|
| T |
7640 |
tccaattcatcgcaatattaaatctccacatccatacatatggcaacacac--tatataattacaaattaaat |
7710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 18190 - 18260
Alignment:
| Q |
19 |
tccaattcattgcaatattaaatttccacatgcatgcatatagcaacacactatatataactacaaattaaat |
91 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| || |||| ||||||||| ||||||| |||||||||||| |
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|
| T |
18190 |
tccaattcatcgcaatattaaatctccacatccacacatacggcaacacac--tatataattacaaattaaat |
18260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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