View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_high_22 (Length: 239)

Name: NF5726_high_22
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_high_22
NF5726_high_22
[»] chr8 (5 HSPs)
chr8 (9-189)||(39431831-39432010)
chr8 (188-239)||(39431759-39431810)
chr8 (188-239)||(28928038-28928089)
chr8 (188-239)||(24965012-24965063)
chr8 (187-239)||(13243060-13243112)
[»] scaffold0075 (1 HSPs)
scaffold0075 (188-239)||(6890-6941)
[»] chr7 (5 HSPs)
chr7 (188-239)||(41759705-41759756)
chr7 (191-239)||(3012280-3012328)
chr7 (188-239)||(815070-815121)
chr7 (188-239)||(35300525-35300576)
chr7 (188-238)||(7873306-7873356)
[»] chr5 (8 HSPs)
chr5 (188-239)||(12267495-12267546)
chr5 (188-239)||(6900752-6900803)
chr5 (188-239)||(16667579-16667630)
chr5 (188-239)||(32953753-32953804)
chr5 (188-239)||(34443945-34443996)
chr5 (188-239)||(43228728-43228779)
chr5 (191-239)||(13694817-13694865)
chr5 (195-239)||(15503902-15503946)
[»] chr4 (7 HSPs)
chr4 (188-239)||(4552165-4552216)
chr4 (188-239)||(41972522-41972573)
chr4 (188-239)||(50383868-50383919)
chr4 (191-239)||(1585692-1585740)
chr4 (188-239)||(2017522-2017573)
chr4 (188-239)||(4728526-4728577)
chr4 (188-239)||(32005894-32005945)
[»] chr3 (6 HSPs)
chr3 (188-239)||(12909805-12909856)
chr3 (188-239)||(44047569-44047620)
chr3 (188-239)||(53651883-53651934)
chr3 (188-239)||(7500929-7500980)
chr3 (188-239)||(25391909-25391960)
chr3 (188-239)||(43700239-43700290)
[»] chr2 (6 HSPs)
chr2 (188-239)||(25562903-25562954)
chr2 (188-239)||(304207-304258)
chr2 (188-239)||(13203747-13203798)
chr2 (188-239)||(22572785-22572836)
chr2 (188-236)||(2475802-2475850)
chr2 (187-239)||(18299227-18299279)
[»] chr1 (7 HSPs)
chr1 (188-239)||(9527024-9527075)
chr1 (188-239)||(25007443-25007494)
chr1 (188-239)||(1428465-1428516)
chr1 (188-239)||(25011621-25011672)
chr1 (188-239)||(27460675-27460726)
chr1 (188-239)||(27584098-27584149)
chr1 (188-239)||(48940513-48940564)
[»] scaffold0638 (1 HSPs)
scaffold0638 (188-239)||(4078-4129)
[»] chr6 (2 HSPs)
chr6 (188-239)||(15528914-15528965)
chr6 (188-239)||(34249098-34249149)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 39432010 - 39431831
Alignment:
Q  9 acatcatcattcaatagagatcaaaccgttaagattacaagttgcgtaaatgcatgcagtatattaacaacttatgagttttaccgaatccgtacttata 108  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39432010 acataatcattccatagagatcaaaccgttaagattacaagttgcgtaaatgcgtgcagtatattaacaacttatgagttttaccgaatccgtacttata 39431911  T
Q  109 aatgtttgttattgaatatggatgttgaatctacaatatacctataggctccaggggcagagccaccaccccagctagcct 189  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39431910 aatgtttgttattaaatatggatgttgaatctacaatatacctataggctccaggggcagagccacc-ccccagctagcct 39431831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 39431810 - 39431759
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  39431810 ctccaactttctttgtagcaaacccttcaattacttgaacttttagcttttc 39431759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 28928038 - 28928089
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  28928038 ctccaactttctttgtagcaagcctaaccattactagaatttttagcttttc 28928089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 24965012 - 24965063
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  24965012 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 24965063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 13243060 - 13243112
Alignment:
Q  187 cctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||| |||||||||||||   |||||| | ||||||||||||||||    
T  13243060 cctccaactttttttgtagcaagcccagccattattagaacttttagcttttc 13243112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 6890 - 6941
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  6890 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 6941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 41759756 - 41759705
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  41759756 ctccaactttctttgtagcaagcccagccattactagaacttttagcttttc 41759705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 3012280 - 3012328
Alignment:
Q  191 caactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||   |||||||| ||||||||||||||||    
T  3012280 caactttctttgtagcaagcccaaccattactagaacttttagcttttc 3012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 815121 - 815070
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||  ||  |||||||| ||||||||||||||||    
T  815121 ctccaactttctttgtagcaaatctagccattactagaacttttagcttttc 815070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 35300576 - 35300525
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| |||  |||||||||||    
T  35300576 ctccaactttctttgtagcaagccctaccattactagaatgtttagcttttc 35300525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 7873356 - 7873306
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagctttt 238  Q
    |||||| |||||||||||||||||   |||||||| |||||||||||||||    
T  7873356 ctccaattttctttgtagcaagcccaaccattactagaacttttagctttt 7873306  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 12267546 - 12267495
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||||  | |||||| ||||||||||||||||    
T  12267546 ctccaactttctttgtagcaagcctagcaattactagaacttttagcttttc 12267495  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 6900752 - 6900803
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||    |||||||| ||||||||||||||||    
T  6900752 ctccaactttctttgtagcaagctcagccattactagaacttttagcttttc 6900803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 16667630 - 16667579
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||| |   |||||||| ||||||||||||||||    
T  16667630 ctccaactttctttgtagcaagtccagccattactagaacttttagcttttc 16667579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 32953804 - 32953753
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||| |||||||||||||||||   |||||||| ||||||||||||||||    
T  32953804 ctccaattttctttgtagcaagcccagccattactagaacttttagcttttc 32953753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 34443945 - 34443996
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| || |||||||||    
T  34443945 ctccaactttctttgtagcaagccctaccattactagaatttgtagcttttc 34443996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 43228779 - 43228728
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||| |||||||||||||||||   |||||||| ||||||||||||||||    
T  43228779 ctccaattttctttgtagcaagcccagccattactagaacttttagcttttc 43228728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 13694817 - 13694865
Alignment:
Q  191 caactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||  ||||||||| |||||| | |||||||    
T  13694817 caactttctttgtagcaagcccatccattactagaacttctcgcttttc 13694865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 15503902 - 15503946
Alignment:
Q  195 tttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||||    
T  15503902 tttctttgtagcaagcctaaccattactagaatttttagcttttc 15503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 4552165 - 4552216
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  4552165 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 4552216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 41972573 - 41972522
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  41972573 ctccaactttctttgtagcaagccgaaccattactagaacttttagcttttc 41972522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 50383868 - 50383919
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  50383868 ctccaactttctttgtagcaagcccagccattactagaacttttagcttttc 50383919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 1585692 - 1585740
Alignment:
Q  191 caactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  1585692 caactttctttgtagcaagccctaccattactagaatttttagcttttc 1585740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 2017573 - 2017522
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||  | |||||||| ||| ||||||||||||    
T  2017573 ctccaactttctttgtagcaagctctaccattactagaatttttagcttttc 2017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 4728526 - 4728577
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  4728526 ctccaactttctttgtagcaagccaaaccattactagaatttttagcttttc 4728577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 32005894 - 32005945
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||| | ||| ||||||||||||    
T  32005894 ctccaactttctttgtagcaagccctaccattattagaatttttagcttttc 32005945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 12909805 - 12909856
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  12909805 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 12909856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 44047569 - 44047620
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  44047569 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 44047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 53651883 - 53651934
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  53651883 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 53651934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 7500929 - 7500980
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  7500929 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 7500980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 25391960 - 25391909
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||| |||||||||| | |||||||| ||| ||||||||||||    
T  25391960 ctccaactttcttcgtagcaagccctaccattactagaatttttagcttttc 25391909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 43700290 - 43700239
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  43700290 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 43700239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 25562903 - 25562954
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  25562903 ctccaactttctttgtagcaagcccaaccattactagaacttttagcttttc 25562954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 304258 - 304207
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||    |||||||| ||||||||||||||||    
T  304258 ctccaactttctttgtagcaagctcagccattactagaacttttagcttttc 304207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 13203747 - 13203798
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  13203747 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 13203798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 22572836 - 22572785
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||||  |||||||| |||  |||||||||||    
T  22572836 ctccaactttctttgtagcaagcctaaccattactagaatatttagcttttc 22572785  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 2475802 - 2475850
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagctt 236  Q
    |||||||||||||||||| |||||   |||||||| |||||||||||||    
T  2475802 ctccaactttctttgtaggaagcccagccattactagaacttttagctt 2475850  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 18299279 - 18299227
Alignment:
Q  187 cctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||||   |||||||| ||| ||||| ||||||    
T  18299279 cctccaactttctttgtagcaagcccaaccattactagaatttttaacttttc 18299227  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 9527024 - 9527075
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  9527024 ctccaactttctttgtagcaagcccagccattactagaacttttagcttttc 9527075  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 25007443 - 25007494
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||    
T  25007443 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttc 25007494  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 1428516 - 1428465
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||| |||||    
T  1428516 ctccaactttctttgtagcaagccctaccattactagaatttttagtttttc 1428465  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 25011672 - 25011621
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  25011672 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 25011621  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 27460675 - 27460726
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  27460675 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 27460726  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 27584149 - 27584098
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  27584149 ctccaactttctttgtagcaagccaaaccattactagaatttttagcttttc 27584098  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 48940564 - 48940513
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||| ||||||||||||||||   |||||||| ||||||||||||||||    
T  48940564 ctccaacattctttgtagcaagccaagccattactagaacttttagcttttc 48940513  T

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Target: scaffold0638 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 4078 - 4129
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||| |||||||||||||||||   |||||||| ||||||||||||||||    
T  4078 ctccaattttctttgtagcaagcccagccattactagaacttttagcttttc 4129  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 15528914 - 15528965
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    |||||||||||||||||||||||| | |||||| | ||| ||||||||||||    
T  15528914 ctccaactttctttgtagcaagccctaccattattagaatttttagcttttc 15528965  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 34249149 - 34249098
Alignment:
Q  188 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 239  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||    
T  34249149 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttc 34249098  T

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