View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_high_4 (Length: 529)
Name: NF5726_high_4
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 17195948 - 17196470
Alignment:
| Q |
1 |
ttcatttcattaaaatataataattgaatggcaaggaactta---------atttcgaccagtaaaattttaaaatcattataagaaaattgcgtactga |
91 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17195948 |
ttcatctcattaaaatataataattgaatggcaaggaacttatgtataagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactga |
17196047 |
T |
|
| Q |
92 |
cccctcattgattcagaatctgatttgtctctgtaagacattttggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcga |
191 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196048 |
cccctcattgattcagaatctgatttgtcactgtaggacattttggtttcaagacttatagctgttcaaatgtactattgctttccctgctgcttatcga |
17196147 |
T |
|
| Q |
192 |
aatatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggcttcataatttgagtggaagtgaagtaataaatcttcatattacataagt |
291 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196148 |
aacatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggcttcataatttgagtggaagtgaagtaataaatcttcatattacataagt |
17196247 |
T |
|
| Q |
292 |
tttgcattgaacgtcgtacataaattgtttaggtttcttgttttttcaatattcttcaaatctttccatcctctttcctggctcttttatgttggttaat |
391 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
17196248 |
tttgcattgaacgtcttacataaactgtttaggtttcttgtttttgcaatattcttcaaatctttccatcctctttcctggctattttacgttggctaat |
17196347 |
T |
|
| Q |
392 |
ctttttggtgctttatttg-nnnnnnntaatcattgtgcttcgttttggtatgtgtttgaaacggtagtagagttaaacatctctcaagaattgactcgc |
490 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196348 |
ctttttggtgctttatttgagaaaaaataatcattgtgcttcgttttggtatgtgtttgaaacggtagtagagttaaacatctctcaagaattgactcgc |
17196447 |
T |
|
| Q |
491 |
tgaatcaagtatatatgcttaat |
513 |
Q |
| |
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|| ||||||| |||||||||||| |
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| T |
17196448 |
tgcatcaagtttatatgcttaat |
17196470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 17184458 - 17183934
Alignment:
| Q |
1 |
ttcatttcattaaaatataataattgaatggcaaggaactta---------atttcgaccagtaaaattttaaaatcattataagaaaattgcgtactga |
91 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17184458 |
ttcatctcattaaaatataataattgaatggcaaggaacttatgtataagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactga |
17184359 |
T |
|
| Q |
92 |
cccctcattgattcagaatctgatttgtctctgtaagacattttggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcga |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17184358 |
cccctcattgattcagaatctgatttgtatctgtaagacattttggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcga |
17184259 |
T |
|
| Q |
192 |
aatatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggcttcataatttgagtggaagtgaagtaa----taaatcttcatattacat |
287 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17184258 |
aacatggttttcttcggtttgagttgaagtgaagtaaacttatatgttggctt--taatttgagtggaagtgaagtaatagttaaatcttcatattacat |
17184161 |
T |
|
| Q |
288 |
aagttttgcattgaacgtcgtacataaattgtttaggtttcttgttttttcaatattcttcaaatctttccatcctctttcctggctcttttatgttggt |
387 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17184160 |
aagttttgcattgaacgtcttacataaactgtttaggtttcttgtttttgcaatattcttcaaatctttccatcctctttcctggctcttttatgttggt |
17184061 |
T |
|
| Q |
388 |
taatctttttggtgctttatttg-nnnnnnntaatcattgtgcttcgttttggtatgtgtttgaaacggtagtagagttaaacatctctcaagaattgac |
486 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17184060 |
taatctttttggtgctttatttgagaaaaaataatcattgtgcttcgttttggtatgtgtttgaaacggtagtagagttaaacatctctcaagaattgac |
17183961 |
T |
|
| Q |
487 |
tcgctgaatcaagtatatatgcttaat |
513 |
Q |
| |
|
|||||| ||||||| |||||||||||| |
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| T |
17183960 |
tcgctgcatcaagtttatatgcttaat |
17183934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 228 - 513
Target Start/End: Original strand, 17193356 - 17193650
Alignment:
| Q |
228 |
aacttatatgttggcttcataatttgagtggaagtgaagtaa----taaatcttcatattacataagttttgcattgaacgtcgtacataaattgtttag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| | |
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| T |
17193356 |
aacttatatgttggcttcataatttgagtggaagtgaagtaataattaaatcttcatattacataagttttgcattaaacgtcttacataaattgtttcg |
17193455 |
T |
|
| Q |
324 |
gtttcttgttttttcaata-ttcttcaaatct---ttccatcctctttcctggctcttttatgttggttaatctttttggtgctttatttg-nnnnnnnt |
418 |
Q |
| |
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|||| || |||| ||| | |||||||||||| ||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||| | |
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| T |
17193456 |
atttcctgattttgcaagatttcttcaaatcttgcttccatcctctttccaggctcttctatgttggttcatcattttggtgctttatttgagaaaaaat |
17193555 |
T |
|
| Q |
419 |
aatcattgtgcttcgttttggtatgtgtttgaaacggtagtagagttaaacatctctcaagaattgactcgctgaatcaagtatatatgcttaat |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
17193556 |
aatcattgtgcttcgttttggtatgtgtttgaaacggtagtagagttaaacatctctcaagaattgactcgctgcatcaagtttatatgcttaat |
17193650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 17193229 - 17193298
Alignment:
| Q |
136 |
ggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaatatggttttctt |
205 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
17193229 |
ggtttcaaaacttatagctgtccaaatgtactattgcttgccctgctgcttatcgaaacatggttttctt |
17193298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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