View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_high_6 (Length: 397)

Name: NF5726_high_6
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_high_6
NF5726_high_6
[»] chr1 (3 HSPs)
chr1 (10-201)||(26453517-26453706)
chr1 (196-355)||(26453245-26453425)
chr1 (352-381)||(26452944-26452973)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 26453706 - 26453517
Alignment:
Q  10 aagaatatgaggaatgagatgggatatatatggagtcttgtccatacatattggtatagttatgaagtttccttatatgcatatttagttttgcaaaact 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453706 aagaaaatgaggaatgagatgggatatatatggagtcttgtccatacat--tggtatagttatgaagtttccttatatgcatatttagttttgcaaaact 26453609  T
Q  110 ctaatatatatgaggaatctctcaatactatctcactatgatgttgaagaagacaatgttgtttgttttagcctctcttcaatgccatttag 201  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453608 ctaatatatatgaggaatctctcaataatatctcattatgatgttgaagaagacaatgttgtttgttttagcctctcttcaatgccatttag 26453517  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 196 - 355
Target Start/End: Complemental strand, 26453425 - 26453245
Alignment:
Q  196 atttagattgaattttatgtttgatattcttattgttttaatgactttcttaataatctttt---------------------attccttaacatatttc 274  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                     |||||||||||||||||    
T  26453425 attttgattgaattttatgtttgatattcttattgttttaatggctttcttaataatcttttgcgctttccatttttttttttattccttaacatatttc 26453326  T
Q  275 aatgtttgatcttggcgaggtgaaggaatatgattggaattactgatcaagaagaagtctcaatattttcttcgatgagga 355  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453325 aatgtttgatcttggtgaggtgaaggaatatgattggaattactgatcaagaagaagtctcaatattttcttcgatgagga 26453245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 381
Target Start/End: Complemental strand, 26452973 - 26452944
Alignment:
Q  352 aggattggagagagtaaatattagtgaact 381  Q
    ||||||||||||||||||||||||||||||    
T  26452973 aggattggagagagtaaatattagtgaact 26452944  T

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