View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_high_7 (Length: 376)
Name: NF5726_high_7
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 17184572 - 17184750
Alignment:
| Q |
19 |
gctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgttaatcaaaaacttaatt |
117 |
Q |
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| T |
17184572 |
gctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgttaattaaaaacttaatt |
17184671 |
T |
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| Q |
118 |
caaaacaattacgaagtgcatcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt |
196 |
Q |
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| T |
17184672 |
caaaacaattacgaagtgcatcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt |
17184750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 195 - 357
Target Start/End: Original strand, 17184788 - 17184950
Alignment:
| Q |
195 |
ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa |
294 |
Q |
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| T |
17184788 |
ttgatcccagcgaaggccgatttgatcgcctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa |
17184887 |
T |
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| Q |
295 |
gcccatattttgaaaactagcaaatgtagttctttttcgtcaaagtcccaaacattaacttgt |
357 |
Q |
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| T |
17184888 |
gcccatattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaactttaacttgt |
17184950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 195 - 357
Target Start/End: Complemental strand, 17195658 - 17195496
Alignment:
| Q |
195 |
ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa |
294 |
Q |
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| T |
17195658 |
ttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaataaactcttcgatccaagtcttcgtgaagacatagtatttgtctgaa |
17195559 |
T |
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| Q |
295 |
gcccatattttgaaaactagcaaatgtagttctttttcgtcaaagtcccaaacattaacttgt |
357 |
Q |
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| T |
17195558 |
gcccatattttgaaaactagcgaatgtagttctttttcgtcaaagtcccaaactttaacttgt |
17195496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 17195854 - 17195696
Alignment:
| Q |
39 |
accaacgacacatcaacattaacagatataaagtag-caatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgca |
137 |
Q |
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| T |
17195854 |
accaacgacacatcaacattaacagatataaagtaggcaatgatcaaaagaaattcttaacgttaatcaaaaacttaattcaaaacaattacgaagtgaa |
17195755 |
T |
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| Q |
138 |
tcaaagcaatcaagtagacattgaaatcaacacctatgaagaattacaaactaagattt |
196 |
Q |
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| T |
17195754 |
tcaaagcaatcaagtagacattgtaagcaacacctatgaagaattacaaactaagattt |
17195696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 17619883 - 17619799
Alignment:
| Q |
194 |
tttgatcccagcgaaggccgatttgatcacctttattcaatttccttcttttaacaaactcttcgatccaagtcttcgtgaagac |
278 |
Q |
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|||||||||| ||||| ||||||||||| ||||| |||| || |||||| ||||||||||||| | |||||||||| |||||||| |
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| T |
17619883 |
tttgatcccatcgaagaccgatttgatcgcctttcttcagttcccttctgttaacaaactctttggtccaagtcttggtgaagac |
17619799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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