View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_low_12 (Length: 354)
Name: NF5726_low_12
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 19133645 - 19133982
Alignment:
| Q |
1 |
tagattcaaatctaaatatatctagacataatattttgaaccctcctagttcttggccagcttcaacacctagctagggttcaaggtattaaccatcgca |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19133645 |
tagattcatatctaaatatatctagacataatattttgaaccctcctagttcttggccagcttcaacacctagctagggttcaaggtattaaccatcgca |
19133744 |
T |
|
| Q |
101 |
tttattttggcagttcggtggttcttcaccttcgttaaaaagaaaggcactttttcacttgcaccttcattctctgctttaacatgagttttcttcaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19133745 |
tttattttggcagttcggtggttcttcaccttcgttaaaaagaaaggcactttttcatttgcaccttcattctctgctttaacatgagttttcttcaaat |
19133844 |
T |
|
| Q |
201 |
cacgttcatcttcatcatcttttagattcttcgtcaactctaaataaaatctgttctttttcatctgaattttgaacacctcttcgttgttttggttatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19133845 |
cacgttcatcttcatcatcttttagattcttcgtcaactctaaataaaatctgttctttttcatctgaattttgaacacctcttcgttgttttggtcatt |
19133944 |
T |
|
| Q |
301 |
aatcatacaactttcatgttcaaataacactttgtaac |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19133945 |
aatcatacaactttcatgttcaaataacactttgtaac |
19133982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 336
Target Start/End: Complemental strand, 28402691 - 28402364
Alignment:
| Q |
8 |
aaatctaaatatatctagacataatattttgaaccctcctagttctt---ggccagcttcaacacctagctagggttcaaggtattaaccatcgcattta |
104 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| |||| | |||||||||||||||||||| | |||| |
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| T |
28402691 |
aaatctaaatatacctagacataatattttgaaccctcccagttctttatggccagcttcaataccttg----ggttcaaggtattaaccatcacgttta |
28402596 |
T |
|
| Q |
105 |
ttttggcagttcggtggttcttcaccttcgttaaaaagaaaggcactttttcacttgcaccttcattctctgctttaacatgagttttcttcaaatcacg |
204 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28402595 |
ttttagcagttcggtggttcttcaccttcgttaaaaagaaaggcactttttcacttgcaccttcattctctgctttaacatgagttttcttcaaatcacg |
28402496 |
T |
|
| Q |
205 |
ttcatcttcatcatcttttagattcttcgtcaactctaaataaaatctgttctttttcatctgaattttgaacacctcttcgttgttttggttattaatc |
304 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||| || |||| |
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| T |
28402495 |
ttcatcttcattatcttctagattcttcgtcaactctaaataaaatcccttgtttttcatcttaattttgaacacctctttgttgttttggtcataaatc |
28402396 |
T |
|
| Q |
305 |
atacaactttcatgttcaaataacactttgta |
336 |
Q |
| |
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| |||| ||||||||||||||||||||||||| |
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| T |
28402395 |
acacaattttcatgttcaaataacactttgta |
28402364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 19931635 - 19931320
Alignment:
| Q |
23 |
tagacataatattttgaaccctcctagttctt---ggccagcttcaacacctagctagggttcaaggtattaaccatcgcatttattttggcagttcggt |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19931635 |
tagacataatattttgaaccctcccagttctttttggccagcttcaataccttg----ggttcaaggtattaaccatcgcatttattttggcagttcggt |
19931540 |
T |
|
| Q |
120 |
ggttcttcaccttcgttaaaaagaaaggcactttttcacttgcaccttcattctctgctttaacatgagttttcttcaaatcacgttcatcttcatcatc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19931539 |
ggttcttcaccttcgttaaaaagaaaggcactttttcacttgcaccttcattctctgctttaacctgagttttcttcaaatcacgttcatcttcatcatc |
19931440 |
T |
|
| Q |
220 |
ttttagatt---cttcgtcaactctaaataaaatctgttctttttcatctgaattttgaacacctcttcgttgttttggttattaatcatacaactttca |
316 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||| |||||||||| | |||||| |||||||| ||||||||||| |||||||| |||| ||||| |
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| T |
19931439 |
ttttagattcttcttcatcaactctaaataaaatctgttgtttttcatcttagttttgaccacctctttgttgttttggtcattaatcacacaattttca |
19931340 |
T |
|
| Q |
317 |
tgttcaaataacactttgta |
336 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
19931339 |
tgttcaaataacactttgta |
19931320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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