View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5726_low_14 (Length: 330)
Name: NF5726_low_14
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 9401263 - 9400963
Alignment:
| Q |
12 |
agagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9401263 |
agagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatattccatttatgggttggattgataaa |
9401164 |
T |
|
| Q |
112 |
ctaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaacaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9401163 |
ctaagagggttgcatggtcgtcttgatagaaatttcaaagagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatgaacaacaat |
9401064 |
T |
|
| Q |
212 |
ttacaagtgaaaaggttattgttgatgtcttactccaattgaaggaaaagcattcattttcttttgatgtcacttttgatcacataaaagggatccttat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9401063 |
ttacaagtgaaaaggttattgttgatgtcttactccaattgaaggaaaagcgttcattttcttttgatatcacttttgatcacataaaagggatccttat |
9400964 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
9400963 |
g |
9400963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 20075609 - 20075368
Alignment:
| Q |
14 |
agagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaact |
113 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||| | |||||||||||||||||| |
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| T |
20075609 |
agaggagtaaattccagggaatgttgcatgagtttgaggccatgataacagctttctttatttctgattatattccattcacgggttggattgataaact |
20075510 |
T |
|
| Q |
114 |
aagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaacaattt |
213 |
Q |
| |
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| || | | || ||||| || ||||||| |||||| | ||||| || |||||||| |||||||||||||||||||||||||| |||||| || |
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| T |
20075509 |
atctggacttcgtgcgcgtctcgaacgaaattttaaggagatggatgagttttaccaagaggttattgatgaacatttggatccaaatagacaac-atga |
20075411 |
T |
|
| Q |
214 |
acaag-tgaaaaggttattgttgatgtcttactccaattgaag |
255 |
Q |
| |
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| | | |||| |||| ||||||||||||||||| ||||||||| |
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| T |
20075410 |
agatgatgaagaggtcattgttgatgtcttactacaattgaag |
20075368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 70 - 308
Target Start/End: Original strand, 8975921 - 8976159
Alignment:
| Q |
70 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
169 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
8975921 |
tttgtttctgattatattccattcatgagttggattgataaacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgaattttatc |
8976020 |
T |
|
| Q |
170 |
aagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgttgatgtcttactccaattgaaggaaaagcattcatt |
269 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||||| ||||| |||| | |||||||||||| ||||||||||||||||| |||| | || || |
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| T |
8976021 |
aagagattattgatgaacatttggatccaaatagagaacaaattacagatgaagaagttattgttgatatcttactccaattgaagaaaaaacgatcgtt |
8976120 |
T |
|
| Q |
270 |
ttcttttgatgtcacttttgatcacataaaagggatcct |
308 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||| |
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| T |
8976121 |
ttcttttgatatcacttttgatcacatcaaaggggtcct |
8976159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 8930257 - 8930020
Alignment:
| Q |
13 |
gagagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaac |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
8930257 |
gagaggagtaaattccatggaatgttgcatgagtttgaggccttgatgacagctttctttgtttctgattatattacattcatgagttggattgataaac |
8930158 |
T |
|
| Q |
113 |
taagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaacaatt |
212 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||| | |||| ||| |||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
8930157 |
ttaggggattgcatggtcgtcttgatagaaatttcaaggagatggatgcattttaccaagaggttattgatgaacatttggatccaaatagacaaaa--- |
8930061 |
T |
|
| Q |
213 |
tacaagtgaaaaggttattgttgatgtcttactccaattga |
253 |
Q |
| |
|
|||| || | || |||||||||||||||||||| |||||| |
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| T |
8930060 |
tacagatggagagtttattgttgatgtcttactcgaattga |
8930020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 70 - 312
Target Start/End: Complemental strand, 9002190 - 9001951
Alignment:
| Q |
70 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
169 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| || || | |
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|
| T |
9002190 |
tttgtttctgattatattccattcatgagttggattgataaacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgatttttatc |
9002091 |
T |
|
| Q |
170 |
aagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgttgatgtcttactccaattgaaggaaaagcattcatt |
269 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| || |||| |||| |||| ||||||||||||||||||| || ||| | ||| |||||| |||||| |
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| T |
9002090 |
aagagattatagatgaacatttggatccaaatagaaaaca---tacagatgaagaggttattgttgatgtcttgcttcaacttaagaaaaagcgttcatt |
9001994 |
T |
|
| Q |
270 |
ttcttttgatgtcacttttgatcacataaaagggatccttatg |
312 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||||| |
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| T |
9001993 |
ttcttttgatatcacttttgatcacatcaaaggggtccttatg |
9001951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 8952831 - 8953067
Alignment:
| Q |
69 |
ctttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctac |
168 |
Q |
| |
|
|||| ||||||||||||| ||||| | ||| ||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||||| || |
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|
| T |
8952831 |
ctttttttctgattatattccattcacgggatggattgataagctcagaggattgcatggtcgtgttgatagaaatttcaaggagtttgatgaattttat |
8952930 |
T |
|
| Q |
169 |
caagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgttgatgtcttactccaattgaaggaaaagcattcat |
268 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||| ||||| |||| ||| ||||||||||||||| ||| || | ||| |||| | ||||| |
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|
| T |
8952931 |
caagagattattgatgaacatttggatccaaatagagaacatattacagatgaagaggatattgttgatgtcttgctcgaactcaagaaaaaacgttcat |
8953030 |
T |
|
| Q |
269 |
tttcttttgatgtcacttttgatcacataaaagggat |
305 |
Q |
| |
|
|||| |||||| ||| ||||||||||| |||||||| |
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|
| T |
8953031 |
tttcatttgatatcaactttgatcacatcaaagggat |
8953067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 9027673 - 9027851
Alignment:
| Q |
70 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
169 |
Q |
| |
|
||||||||||||||||| || || ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
9027673 |
tttgtttctgattatattcccttcatgagttggattgataaacttaggggattgcatggtcgtcttgatagaaatttcaaggagtttgatgaattttatc |
9027772 |
T |
|
| Q |
170 |
aagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgttgatgtcttactcca |
248 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| || ||||| ||||| |||| | | ||||||||||||||||||||| |
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|
| T |
9027773 |
aagagattattgatgtacatttggatccaaatagagaacaaattacagatgaagaagatattgttgatgtcttactcca |
9027851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 8916413 - 8916218
Alignment:
| Q |
14 |
agagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaact |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
8916413 |
agaggagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctctctttatttctgattatattccatttacgggttggattgataaact |
8916314 |
T |
|
| Q |
114 |
aagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaaca |
209 |
Q |
| |
|
| || | | || ||||| || ||||||| |||||| | ||||| || ||||| || |||||||||||||||||||||||||| ||||||| |
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|
| T |
8916313 |
atctggccttcgtgcacgtctcgaacgaaattttaaggagatggatgagttttaccaggaggttattgatgaacatttggatccaaatagacaaca |
8916218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 70 - 296
Target Start/End: Complemental strand, 8972128 - 8971902
Alignment:
| Q |
70 |
tttgtttctgattatatcccatttatgggttggattgataaactaagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctacc |
169 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||| ||||||| || ||||| |||||||||||| |||||| |||||||||||||||||||||||| || | |
|
|
| T |
8972128 |
tttgtttgtgattatattccatatatgggttggcttgataagcttagaggattgcatggtcgtgttgataaaaatttcaaggagtttgatgaattttatc |
8972029 |
T |
|
| Q |
170 |
aagaaattattgatgaacatttggatccaaatggacaacaatttacaagtgaaaaggttattgttgatgtcttactccaattgaaggaaaagcattcatt |
269 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || ||||| ||| | |||| | | |||||||||||| ||||||||| | ||| || | |||| || |
|
|
| T |
8972028 |
aagagattattgatgagcatttggatccaaatagagaacaaattaaagatgaagaagatattgttgatgttttactccaactcaagaaacatcatttatc |
8971929 |
T |
|
| Q |
270 |
ttcttttgatgtcacttttgatcacat |
296 |
Q |
| |
|
||| ||||| ||||||| |||||||| |
|
|
| T |
8971928 |
ttcaattgatctcactttcgatcacat |
8971902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 8905569 - 8905374
Alignment:
| Q |
14 |
agagtagtaaattccatggaatgttgcatgagtttgaggccatgttgacagctttctttgtttctgattatatcccatttatgggttggattgataaact |
113 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
8905569 |
agaggagtaaattccatggaatgttgcgtgagtttgaggccatgttgacagctctctttatttctgattatattccatttacgggttggattgataaact |
8905470 |
T |
|
| Q |
114 |
aagagggttgcatggtcgtcttgatagaaatttcaaggagtttgatgaattctaccaagaaattattgatgaacatttggatccaaatggacaaca |
209 |
Q |
| |
|
| || | | || ||||| || ||||||| |||||| | ||||| || ||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
8905469 |
atctggccttcgtgcacgtctcgaacgaaattttaaggagatggatgagttttaccaggaggttattgatgaacatttggatccaaatagacaaca |
8905374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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