View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_low_18 (Length: 269)

Name: NF5726_low_18
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_low_18
NF5726_low_18
[»] chr8 (9 HSPs)
chr8 (19-150)||(39431467-39431595)
chr8 (133-230)||(27321753-27321850)
chr8 (202-257)||(13243210-13243265)
chr8 (172-219)||(24965150-24965197)
chr8 (172-230)||(36406419-36406477)
chr8 (179-230)||(28928187-28928238)
chr8 (184-243)||(34282802-34282861)
chr8 (196-259)||(34282835-34282898)
chr8 (133-226)||(3383910-3384003)
[»] chr4 (14 HSPs)
chr4 (172-257)||(52373855-52373940)
chr4 (172-230)||(46645731-46645789)
chr4 (172-230)||(10715784-10715842)
chr4 (172-230)||(10929554-10929612)
chr4 (172-230)||(40969352-40969410)
chr4 (172-230)||(43003114-43003172)
chr4 (133-218)||(31364254-31364339)
chr4 (172-243)||(9003670-9003741)
chr4 (172-230)||(4728686-4728744)
chr4 (172-218)||(10058656-10058702)
chr4 (172-230)||(50099998-50100056)
chr4 (133-219)||(14044463-14044549)
chr4 (178-219)||(25237727-25237768)
chr4 (179-219)||(2521835-2521875)
[»] chr3 (7 HSPs)
chr3 (172-257)||(41218285-41218370)
chr3 (172-230)||(7501089-7501147)
chr3 (177-230)||(43700128-43700181)
chr3 (172-219)||(53987975-53988022)
chr3 (133-230)||(33178983-33179080)
chr3 (172-218)||(26370972-26371018)
chr3 (172-218)||(37516766-37516812)
[»] chr2 (13 HSPs)
chr2 (178-259)||(17148895-17148976)
chr2 (172-226)||(29257498-29257552)
chr2 (172-259)||(45444383-45444466)
chr2 (133-243)||(303982-304092)
chr2 (133-219)||(17249469-17249555)
chr2 (179-230)||(18299079-18299130)
chr2 (172-218)||(22572651-22572697)
chr2 (172-230)||(41010640-41010698)
chr2 (172-230)||(41114799-41114857)
chr2 (133-219)||(2475945-2476031)
chr2 (178-230)||(6799821-6799873)
chr2 (202-259)||(25563050-25563107)
chr2 (133-230)||(13203895-13203992)
[»] chr6 (12 HSPs)
chr6 (133-229)||(15122172-15122268)
chr6 (142-230)||(9696183-9696271)
chr6 (138-230)||(14938818-14938910)
chr6 (133-230)||(2960800-2960897)
chr6 (197-257)||(34188899-34188959)
chr6 (146-230)||(2836071-2836155)
chr6 (172-230)||(2941350-2941408)
chr6 (172-230)||(23663689-23663747)
chr6 (172-230)||(34248943-34249001)
chr6 (133-218)||(1780934-1781019)
chr6 (172-230)||(10397739-10397797)
chr6 (172-230)||(28614334-28614392)
[»] chr5 (20 HSPs)
chr5 (172-230)||(15675440-15675498)
chr5 (172-257)||(767398-767483)
chr5 (172-257)||(13942683-13942767)
chr5 (172-243)||(15504063-15504134)
chr5 (127-230)||(14832696-14832799)
chr5 (172-230)||(35469030-35469088)
chr5 (133-243)||(6900881-6900991)
chr5 (172-253)||(36234485-36234566)
chr5 (172-243)||(7162014-7162085)
chr5 (172-243)||(32953598-32953669)
chr5 (172-219)||(37552052-37552099)
chr5 (172-219)||(37654882-37654929)
chr5 (172-230)||(1672417-1672475)
chr5 (133-243)||(16567905-16568015)
chr5 (172-259)||(12267313-12267399)
chr5 (172-226)||(2476496-2476550)
chr5 (172-230)||(30249092-30249150)
chr5 (172-218)||(33007025-33007071)
chr5 (172-226)||(34444097-34444151)
chr5 (172-218)||(34846485-34846531)
[»] chr1 (12 HSPs)
chr1 (133-218)||(9527196-9527281)
chr1 (172-230)||(14727457-14727515)
chr1 (133-243)||(4774086-4774196)
chr1 (172-230)||(27460806-27460864)
chr1 (177-230)||(4641972-4642025)
chr1 (172-257)||(49898492-49898573)
chr1 (172-226)||(25007595-25007649)
chr1 (196-230)||(27583967-27584001)
chr1 (172-218)||(31844571-31844617)
chr1 (172-218)||(33468901-33468947)
chr1 (172-226)||(37153920-37153974)
chr1 (172-226)||(44305543-44305597)
[»] chr7 (10 HSPs)
chr7 (172-255)||(4843422-4843505)
chr7 (133-219)||(3012460-3012546)
chr7 (133-229)||(21932633-21932729)
chr7 (172-219)||(22206616-22206663)
chr7 (172-219)||(22228076-22228123)
chr7 (196-257)||(19377511-19377573)
chr7 (133-216)||(26722850-26722933)
chr7 (172-218)||(28693933-28693979)
chr7 (194-230)||(21688276-21688312)
chr7 (179-219)||(25688148-25688188)
[»] scaffold0618 (1 HSPs)
scaffold0618 (172-226)||(1827-1881)
[»] scaffold0638 (1 HSPs)
scaffold0638 (172-218)||(4217-4263)
[»] scaffold0075 (1 HSPs)
scaffold0075 (172-226)||(11655-11709)
[»] scaffold0021 (1 HSPs)
scaffold0021 (172-220)||(109234-109282)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 39431467 - 39431595
Alignment:
Q  19 gatcaagcgggtatgtctagtctctcatgatttatggttttttgctagattgataattggcttggttcatcattctccaccatataattaatatgaacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||||||||||||||    
T  39431467 gatcaagcgggtatgtctagtctctcatgatttatggttttttgctagattgataattggtttg----atcattctccaccatataattaatatgaacaa 39431562  T
Q  119 gttagctata-gcattggcagagtcagaaattt 150  Q
    |||||||||| |||||||| ||| |||||||||    
T  39431563 gttagctataggcattggcggagccagaaattt 39431595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 27321753 - 27321850
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||||||| ||||||||||||||||  || ||       |||| |||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  27321753 tggcagagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttc 27321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 13243265 - 13243210
Alignment:
Q  202 ataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    ||||||||||||||||||  ||||||||| | |||||||||| |||||||||||||    
T  13243265 ataatttcacatttcctgcggataatttcacatttcttgcggatcctaaaatccta 13243210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 24965197 - 24965150
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||    
T  24965197 ttatcgcaaaaccttactttctttctgcgaataatttcacatttcctg 24965150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 36406419 - 36406477
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  36406419 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttgcagataatttc 36406477  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 28928238 - 28928187
Alignment:
Q  179 aaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  28928238 aaaaagttacttccttcctgcgaataatttcacattttctgcagataatttc 28928187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 34282802 - 34282861
Alignment:
Q  184 gttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 243  Q
    ||||||| ||| |||||||||||||||||||||||| | |||||||| | |||| |||||    
T  34282802 gttacttccttcctgcgaataatttcacatttcctgcaaataatttcacatttcatgcgg 34282861  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 34282835 - 34282898
Alignment:
Q  196 ctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 259  Q
    |||| |||||||||||||||| ||  ||||||||| | |||| ||||| |||||||||||||||    
T  34282835 ctgcaaataatttcacatttcatgcggataatttcacatttcctgcggatcctaaaatcctatg 34282898  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 3383910 - 3384003
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| ||| |||||||||||||||  ||||||       |||| |||||| ||||||| ||| || ||||||||||||| ||||||| ||||||    
T  3383910 tggcggagccagaaattttatagaacatgagcaaaaattttatcgcaaaacgttacttccttcctacgaataatttcacgtttcctgcagataa 3384003  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 52373940 - 52373855
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||||    
T  52373940 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttcacatttcatgcggatcctaaaatccta 52373855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 46645789 - 46645731
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  46645789 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtatataatttc 46645731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 10715842 - 10715784
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  10715842 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10715784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 10929612 - 10929554
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  10929612 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10929554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 40969410 - 40969352
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  40969410 ttatcgcaaaacgttacttcctttctgcgaataatttcatattttctgcagataatttc 40969352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 43003114 - 43003172
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||||||| || |||||||  || |||||||||||||||||||||||| ||||||||||    
T  43003114 ttattgcagaacgttacttctttcctgcgaataatttcacatttcctgcagataatttc 43003172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 31364339 - 31364254
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| ||| |||||||||||||||| ||| ||       |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  31364339 tggcggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 31364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 9003741 - 9003670
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 243  Q
    |||| |||||| ||||||| |||  |||||||||||||||||||||| | ||||||||| | |||| |||||    
T  9003741 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcctatggataatttcacatttcctgcgg 9003670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 4728744 - 4728686
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||| ||||||||||||||| ||| ||||||||||    
T  4728744 ttatcgcaaaacgttacttccttcctgcaaataatttcacattttctgcagataatttc 4728686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 10058702 - 10058656
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  10058702 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 10058656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 50100056 - 50099998
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| || |||||||||||||||||||||  |||||||||    
T  50100056 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcggataatttc 50099998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 14044549 - 14044463
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| ||| |||||||||||||||||||| ||       |||| |||||| ||||| | ||| ||| ||||||||||||||||||||    
T  14044549 tggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcctg 14044463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 25237768 - 25237727
Alignment:
Q  178 caaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  25237768 caaaacgttacttccttcctgcgaataatttcacatttcctg 25237727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 2521835 - 2521875
Alignment:
Q  179 aaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  2521835 aaaacgttacttccttcctgcgaataatttcacatttcctg 2521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 41218285 - 41218370
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| |||||||||  | |||| ||||| |||||||||||||    
T  41218285 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattttacatttcctgcggatcctaaaatccta 41218370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 7501147 - 7501089
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  7501147 ttatcgcaaaacgttacttacttcctgcgaataatttcacatttcctgcagataatttc 7501089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 43700128 - 43700181
Alignment:
Q  177 gcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||||| |||||||  ||||||||||||||||||||||||||| ||||||||||    
T  43700128 gcaaaacgttacttcttttctgcgaataatttcacatttcctgcagataatttc 43700181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 53988022 - 53987975
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  53988022 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctg 53987975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 33178983 - 33179080
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| |||||||  || |||||||||||||||||||| ||| ||||||||||    
T  33178983 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattttctgcagataatttc 33179080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 26370972 - 26371018
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  26370972 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 26371018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 37516812 - 37516766
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  37516812 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 37516766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 17148976 - 17148895
Alignment:
Q  178 caaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 259  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| |||||||| | | |||| ||||| |||||||||||||||    
T  17148976 caaaacgttacttccttcctgcgaataatttcacatttcctgcagataattccacatttcctgcggatcctaaaatcctatg 17148895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 29257552 - 29257498
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  29257552 ttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataa 29257498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 45444383 - 45444466
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 259  Q
    |||||||||||  |||||| ||| ||||||||||||||||||||||||||||||  |    ||||||||| | |||||||||||||||    
T  45444383 ttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagatatat----ctttcttgcagatcctaaaatcctatg 45444466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 303982 - 304092
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 232  Q
    |||| ||| ||||||||||||||||| || ||       |||| |||||| |||||||  | ||||||||||||||||||||||||| |||||||||| |    
T  303982 tggcggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcctgcagataatttcac 304081  T
Q  233 ctttcttgcgg 243  Q
     |||| |||||    
T  304082 atttcctgcgg 304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 17249555 - 17249469
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  17249555 tggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctg 17249469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 18299079 - 18299130
Alignment:
Q  179 aaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  18299079 aaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 18299130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 22572651 - 22572697
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||    
T  22572651 ttatcgcaaaacgttactttcttcctgcgaataatttcacatttcct 22572697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 41010698 - 41010640
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||| ||||||    
T  41010698 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagaaaatttc 41010640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 41114799 - 41114857
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  41114799 ttatcgcaaaacgttacttccttcatgcgaataatttcacatttcctgcagataatttc 41114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 2476031 - 2475945
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||||||||||| ||||||||||||  || ||       |||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  2476031 tggcagagtcaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctg 2475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 6799821 - 6799873
Alignment:
Q  178 caaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    ||||| |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  6799821 caaaacgttagttccttcctgcgaataatttcacatttcctgcagataatttc 6799873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 25563107 - 25563050
Alignment:
Q  202 ataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 259  Q
    ||||||||||||||||||  ||||||||| | |||| || || |||||||||||||||    
T  25563107 ataatttcacatttcctggggataatttcacatttcctgtggatcctaaaatcctatg 25563050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 13203992 - 13203895
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||| ||| |||||||||||| ||||||       |||| |||||| ||||||| ||| | |||||||||||||||||| | | ||||||||||    
T  13203992 tggcggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattttccgcagataatttc 13203895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 15122268 - 15122172
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataattt 229  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||||    
T  15122268 tggcggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattttctgcagataattt 15122172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 9696271 - 9696183
Alignment:
Q  142 cagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    ||||||||||||||||| || ||       |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  9696271 cagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 9696183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 14938818 - 14938910
Alignment:
Q  138 gagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    ||||||||||||||||||||  || ||       |||| |||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  14938818 gagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttcctgcagataatttc 14938910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 2960897 - 2960800
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||| ||||||||||||||||  |||||       ||||||||||| ||||||| |||  |||||||||||||||||||||||  |||||||||    
T  2960897 tggcggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttcctgcggataatttc 2960800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 34188959 - 34188899
Alignment:
Q  197 tgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    |||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||||    
T  34188959 tgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatccta 34188899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 2836071 - 2836155
Alignment:
Q  146 aattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    ||||||||||||| |||||       ||||| ||| | ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  2836071 aattttatagagtctgagcaaaaaatttattacaagacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 2836155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 2941408 - 2941350
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||||||    
T  2941408 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataatttc 2941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 23663689 - 23663747
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| |||||||  || |||||||||||||||||||||||| ||||||||||    
T  23663689 ttatcgcaaaacgttacttcattcctgcgaataatttcacatttcctgcagataatttc 23663747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 34248943 - 34249001
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||||    
T  34248943 ttatcgcaaaacgttacttccttcctgcggataatttcacatttcctgcagataatttc 34249001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 1780934 - 1781019
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||||||| ||| ||||||||||||| || ||       |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  1780934 tggcagagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 1781019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 10397739 - 10397797
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||   ||||||||||    
T  10397739 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttccaacagataatttc 10397797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 28614334 - 28614392
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||| |||  |||||||||    
T  28614334 ttatcgcaaaatgttacttccttcctgcgaataatttcacattttctgctgataatttc 28614392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 15675498 - 15675440
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15675498 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtagataatttc 15675440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 767483 - 767398
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||| |||  ||||||||| | |||| ||| | |||||||||||||    
T  767483 ttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggataatttcacatttcctgcagatcctaaaatccta 767398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 13942683 - 13942767
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||||| ||| | |||| ||||| |||||||||||||    
T  13942683 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggataa-ttcacatttcctgcggatcctaaaatccta 13942767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 15504134 - 15504063
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 243  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| |||||||||| | |||| |||||    
T  15504134 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctgcgg 15504063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 14832696 - 14832799
Alignment:
Q  127 tagcattggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    ||||| |||| ||| ||||||||||||||||| || ||       |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||    
T  14832696 tagcagtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataa 14832795  T
Q  227 tttc 230  Q
    ||||    
T  14832796 tttc 14832799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 35469088 - 35469030
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  35469088 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttc 35469030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 6900991 - 6900881
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 232  Q
    |||| ||| ||||||||| ||||||||||||        |||| |||||| ||||||| |||  |||||||||||||||||||||||  ||||||||| |    
T  6900991 tggcggagacagaaatttaatagagtatgagtaaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttcctgcggataatttcac 6900892  T
Q  233 ctttcttgcgg 243  Q
     ||||||||||    
T  6900891 atttcttgcgg 6900881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 36234485 - 36234566
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaat 253  Q
    |||| |||||| ||||||| |||  |||||||||||||||||||| || |||||||||| | |||| ||||| |||||||||    
T  36234485 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcggatcctaaaat 36234566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 7162014 - 7162085
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 243  Q
    |||| |||||| ||||||| ||| |||| |||||||||||||||||||| ||||||||| | |||| |||||    
T  7162014 ttatcgcaaaatgttacttccttcctgcaaataatttcacatttcctgtggataatttcacatttcctgcgg 7162085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 32953598 - 32953669
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 243  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| |||||||||| | |||| |||||    
T  32953598 ttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgcagataatttcacatttcctgcgg 32953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 37552099 - 37552052
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  37552099 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctg 37552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 37654929 - 37654882
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  37654929 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctg 37654882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 1672417 - 1672475
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  1672417 ttatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttc 1672475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 16568015 - 16567905
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 232  Q
    |||| ||||||||||||||||||||  || ||       |||| |||||| ||||||| ||| ||| ||||||||||||||||||||  ||||||||| |    
T  16568015 tggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcctgcggataatttcac 16567916  T
Q  233 ctttcttgcgg 243  Q
     |||| |||||    
T  16567915 atttcctgcgg 16567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 12267313 - 12267399
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 259  Q
    |||| |||||| ||||||| ||| ||| |||||||||||||||| |||  ||||| ||| | |||| ||||| |||||||||||||||    
T  12267313 ttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggataa-ttcacatttcctgcggatcctaaaatcctatg 12267399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 2476550 - 2476496
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  2476550 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 2476496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 30249150 - 30249092
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||| ||||||| |||| ||||||||||||||| ||| ||||||||||    
T  30249150 ttatcgcaaaacgttgctttcttcctgcaaataatttcacattttctgcagataatttc 30249092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 33007071 - 33007025
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  33007071 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 33007025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 34444151 - 34444097
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  34444151 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 34444097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 34846531 - 34846485
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  34846531 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 34846485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 9527281 - 9527196
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||||||| |||||||||||||||||||| ||       |||| |||||| |||||| |||| |||||||||||||||||||||||    
T  9527281 tggcagagccagaaattttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcct 9527196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 14727515 - 14727457
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  14727515 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 14727457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 4774196 - 4774086
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 232  Q
    |||| ||| ||||||||||||||||| || ||       |||| |||||| ||||||||||| ||||||||||||||||||||| ||  ||||||||| |    
T  4774196 tggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgcggataatttcac 4774097  T
Q  233 ctttcttgcgg 243  Q
     |||| |||||    
T  4774096 atttcctgcgg 4774086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 27460864 - 27460806
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  27460864 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 27460806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 4641972 - 4642025
Alignment:
Q  177 gcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||  |||||||||    
T  4641972 gcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttc 4642025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 49898573 - 49898492
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    |||| |||||| ||||| | ||| ||||||||||||||||||||||||| ||||  |    ||||||||||| |||||||||||||    
T  49898573 ttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcctgtggatatat----ctttcttgcggatcctaaaatccta 49898492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 25007649 - 25007595
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  25007649 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 25007595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 27583967 - 27584001
Alignment:
Q  196 ctgcgaataatttcacatttcctgtagataatttc 230  Q
    |||||||||||||||||||||||| ||||||||||    
T  27583967 ctgcgaataatttcacatttcctgcagataatttc 27584001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 31844571 - 31844617
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  31844571 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 31844617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 33468901 - 33468947
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  33468901 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 33468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 37153920 - 37153974
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  37153920 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 37153974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 44305597 - 44305543
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  44305597 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 44305543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 4843505 - 4843422
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcc 255  Q
    |||| |||||| |||||||  || ||||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||    
T  4843505 ttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatcc 4843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 3012546 - 3012460
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| ||| ||||||||||||||||| || ||       ||||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  3012546 tggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctg 3012460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 21932633 - 21932729
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataattt 229  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| |||||||  || ||||||||||||||| |||||||| |||||||||    
T  21932633 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcctgcagataattt 21932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 22206616 - 22206663
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  22206616 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctg 22206663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 22228123 - 22228076
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  22228123 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctg 22228076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 19377573 - 19377511
Alignment:
Q  196 ctgcgaataatttcacattt-cctgtagataatttctcctttcttgcgggtcctaaaatccta 257  Q
    |||||||||||||||||||| ||||  ||||||||| | |||| ||||| |||||||||||||    
T  19377573 ctgcgaataatttcacattttcctgcggataatttcacatttcctgcggatcctaaaatccta 19377511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 26722850 - 26722933
Alignment:
Q  133 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttc 216  Q
    |||||||||||| ||||||||||||  || ||       |||| |||||| ||||||| ||| |||||||||||||||||||||    
T  26722850 tggcagagtcaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 28693933 - 28693979
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| ||||||  |||||| |||||||||||||||||||||||||||    
T  28693933 ttatcgcaaaactttacttcctttctgcgaataatttcacatttcct 28693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 21688312 - 21688276
Alignment:
Q  194 ttctgcgaataatttcacatttcctgtagataatttc 230  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  21688312 ttctgtgaataatttcacatttcctgcagataatttc 21688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 25688148 - 25688188
Alignment:
Q  179 aaaaggttactttctttctgcgaataatttcacatttcctg 219  Q
    |||| ||||||| ||||||| ||||||||||||||||||||    
T  25688148 aaaatgttacttcctttctgtgaataatttcacatttcctg 25688188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 1881 - 1827
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  1881 ttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataa 1827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 4263 - 4217
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 218  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  4263 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 4217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 11709 - 11655
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 226  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  11709 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 11655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 109234 - 109282
Alignment:
Q  172 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgt 220  Q
    |||||||||||  |||||| ||| |||||||||||||||| ||||||||    
T  109234 ttattgcaaaacattacttccttcctgcgaataatttcacgtttcctgt 109282  T

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