View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_low_19 (Length: 269)
Name: NF5726_low_19
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_19 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 24481672 - 24481536
Alignment:
| Q |
133 |
atgtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccatctcctccatatatctacaagtcgccacctcccccacc |
232 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24481672 |
atgtgtataagtcaccacctcctccaccttatgtttacccatctcctcctccaccatcaccacctcctccatatatctacaagtcgccacctcccccacc |
24481573 |
T |
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| Q |
233 |
atatgtgtacaacccacctccatatgtctacaagtct |
269 |
Q |
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| T |
24481572 |
atatgtgtacaccccacctccatatgtctacaagtct |
24481536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 24481946 - 24481837
Alignment:
| Q |
135 |
gtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccatctcctccatatatctacaagtcgccacctcccccaccat |
234 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| || || || || |||| |
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| T |
24481946 |
gtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccacctcctccatatgtgtacaagtcacccccacctcctccat |
24481847 |
T |
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| Q |
235 |
atgtgtacaa |
244 |
Q |
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|||||||||| |
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| T |
24481846 |
atgtgtacaa |
24481837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 238
Target Start/End: Complemental strand, 24481846 - 24481741
Alignment:
| Q |
133 |
atgtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccatctcctccatatatctacaagtcgccacctcccccacc |
232 |
Q |
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||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| | ||||| || |||||||| ||||| |
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| T |
24481846 |
atgtgtacaagtcaccacctcctccaccttacgtttacccgtctcctcctccaccatcaccacctcctccatacgtatacaaatcaccacctcctccacc |
24481747 |
T |
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| Q |
233 |
atatgt |
238 |
Q |
| |
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||||| |
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| T |
24481746 |
ttatgt |
24481741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 24482078 - 24481969
Alignment:
| Q |
135 |
gtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccatctcctccatatatctacaagtcgccacctcccccaccat |
234 |
Q |
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||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||| | |||||||| || || || || |||| |
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| T |
24482078 |
gtgtacaagtcaccacctcctccaccttacgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccat |
24481979 |
T |
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| Q |
235 |
atgtgtacaa |
244 |
Q |
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|||||||||| |
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| T |
24481978 |
atgtgtacaa |
24481969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 24482182 - 24482071
Alignment:
| Q |
133 |
atgtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccatctcctccatatatctacaagtcgccacctcccccacc |
232 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| | |||||||| || || || || || |
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| T |
24482182 |
atgtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctcc |
24482083 |
T |
|
| Q |
233 |
atatgtgtacaa |
244 |
Q |
| |
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||| |||||||| |
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| T |
24482082 |
atacgtgtacaa |
24482071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 24481763 - 24481666
Alignment:
| Q |
144 |
tcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccatctcctccatatatctacaagtcgccacctcccccaccatatgtgta |
241 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || || || || || ||||||||||| |
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| T |
24481763 |
tcaccacctcctccaccttatgtttacccatctcctcctccaccatcgcctcctcctccatatatctacaaatcacccccacctcctccatatgtgta |
24481666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 24481792 - 24481763
Alignment:
| Q |
13 |
catcaccacctcctccatacgtatacaaat |
42 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24481792 |
catcaccacctcctccatacgtatacaaat |
24481763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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