View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_low_2 (Length: 673)
Name: NF5726_low_2
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 5 - 655
Target Start/End: Complemental strand, 13408984 - 13408327
Alignment:
| Q |
5 |
ttgaatcatctggcccgcagcaatctggtgttatagttataataatcgttagattttaagcgataaaatctaactgttcttacaactgtggcaccatact |
104 |
Q |
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| T |
13408984 |
ttgaatcatctagcccgcagctgtctggtgttatagttataataaccgttagattttaagcgataaaatgtaaccgttcttacaactgtggcaccatact |
13408885 |
T |
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| Q |
105 |
gcagttgtagatgattcaaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatctacgactgtagtatggtgttgtagctgtta |
204 |
Q |
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| T |
13408884 |
gcagttgtagatgattcaaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatctacaactgcagtatggtgttgtagctgtta |
13408785 |
T |
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| Q |
205 |
taacggttagattttaagcgataaaatccaaccgtttgtataactatgacaacatactg------caggcgtagacgatggagt-aagaaaaagtatgat |
297 |
Q |
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| T |
13408784 |
taacggttagattttaagcgataaaattcaaccgtttgtataactatgacaccatactgatactgcaggcgtagacgatggagttaagaaaaagtatgat |
13408685 |
T |
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| Q |
298 |
atagaagtgcacctgatgataatgaggatgattcttgagaaggtaccataacagttctaaagagtctaggaggaacaacagcttgagttatatactgatt |
397 |
Q |
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| T |
13408684 |
atagaagtgcacctgatgataatgaggatgattcttgagaaggtaccataacagttctaaagagtctaggaggaacaacagcttgagttatatactgatt |
13408585 |
T |
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| Q |
398 |
agaaccactactttcttcatcacgccctcttttttgaccactccatgaacttgaagcataagaagaagaagatgaagcacttccaaaacttgatatcaaa |
497 |
Q |
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| T |
13408584 |
agaaccactactttcttcatcacgccctcttttttgaccactccatgaacttgaagcataagaagaagaagatgaagcatttccaaaacttgatatcaaa |
13408485 |
T |
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| Q |
498 |
ggaaaatcactcctttgaatccattcattactactcatttgatttgaccctgatgatgcaacatgtgttagagctgaaaccatttctgataactctctat |
597 |
Q |
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| T |
13408484 |
ggaaaatcactcctttgaatccattcattactactcatttgatttgaccctgatgatgcaacatgtgttagagctgaaaccatttctgataactctctat |
13408385 |
T |
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| Q |
598 |
caccattataccctgaaaacatttggttgaaatctaactgtgatgcattagaacttcc |
655 |
Q |
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| T |
13408384 |
caccattataccctgaaaacatttggttgaaatccaactgtgatgcattagaacttcc |
13408327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 13409027 - 13408881
Alignment:
| Q |
121 |
caaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatcta--cgactgtagtatggtgttgtagctgttataacggttagattt |
218 |
Q |
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| T |
13409027 |
caaataataatgttttgtgatcaagaaatgaatga-aaaataacttgaatcatctagcccgcagctgtctggtgttatagttataataaccgttagattt |
13408929 |
T |
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| Q |
219 |
taagcgataaaatccaaccgtttgtataactatgacaacatactgcag |
266 |
Q |
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| T |
13408928 |
taagcgataaaatgtaaccgttcttacaactgtggcaccatactgcag |
13408881 |
T |
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