View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5726_low_24 (Length: 252)
Name: NF5726_low_24
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_24 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9401469 - 9401714
Alignment:
| Q |
1 |
ttcttaaatctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9401469 |
ttcttaaatctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaa |
9401568 |
T |
|
| Q |
101 |
cacatgatcattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9401569 |
cacatgatcattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatat |
9401668 |
T |
|
| Q |
201 |
atttttgaaagttttgataattgaagataaagagtagaattatcta |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9401669 |
atttttgaaagttttgataattgaagataaagagtagaattgtcta |
9401714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20075817 - 20076060
Alignment:
| Q |
1 |
ttcttaaatctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaa |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| |||||||||||| |||| |
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|
| T |
20075817 |
ttcttatatctctccaaaaatcactatattgagaaaatacaatttctgacccattataagataatctttgctggccatataacataggtctattagaaaa |
20075916 |
T |
|
| Q |
101 |
cacatgatcattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatat |
200 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
20075917 |
cacatgatcattatttttaaatatctctttggcaattttatctgaagaaacaacaattgctggccttaaaccaagtttcatggaaaatattggtccataa |
20076016 |
T |
|
| Q |
201 |
atttttgaaagttttgataattgaagataaagagtagaattatc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
20076017 |
atttttgaaagttttgataattgaagatagagaatagaattatc |
20076060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8916624 - 8916864
Alignment:
| Q |
1 |
ttcttaaatctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaa |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||| || ||||||| |||||||||||| |||| |
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|
| T |
8916624 |
ttcttatatctctccaaaaatcactatattgagaaaatacaatttctgacccattataagataatctttgctgaccatataacataggtctattagaaaa |
8916723 |
T |
|
| Q |
101 |
cacatgatcattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatat |
200 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
8916724 |
cacatgatcattatttttaaatatctctttggcaattttatctgaagaaacaacaattgctggccttaaaccaagtttcaaggaaaatattggtccataa |
8916823 |
T |
|
| Q |
201 |
atttttgaaagttttgataattgaagataaagagtagaatt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8916824 |
atttttgaaagttttgataattgaagataaagaatagaatt |
8916864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8905780 - 8906020
Alignment:
| Q |
1 |
ttcttaaatctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaa |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||| |||| || ||||||| |||||||||||| |||| |
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|
| T |
8905780 |
ttcttatatctctccaaaaatcactatattgagaaaatacaatttctgacccattataagataatctttgctgaccatataacataggtctattagaaaa |
8905879 |
T |
|
| Q |
101 |
cacatgatcattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatat |
200 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
8905880 |
cacatgatcattatttttaaatatctctttggcaattttatctgaagaaacaacaattgctggccttaaaccaagtttcaaggaaaatattggtccataa |
8905979 |
T |
|
| Q |
201 |
atttttgaaagttttgataattgaagataaagagtagaatt |
241 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
8905980 |
atttttgaaagatttgataattgaagataaagaatagaatt |
8906020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 8930472 - 8930709
Alignment:
| Q |
9 |
tctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaacacatgat |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||| |
|
|
| T |
8930472 |
tctctccaaaaatcactatattgagaaaatgcaatgtctgacccattataagataatttttgctggccatataacacaggtctattagaaaacacttgat |
8930571 |
T |
|
| Q |
109 |
cattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttga |
208 |
Q |
| |
|
|||| | ||||||||||||||| ||||||| ||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
8930572 |
cattatttttaaatatttctttcgcaatttcagccgaagaaacaacaatagctgatcttaaacctagttgaagtgaaaatattggtccataaatttttga |
8930671 |
T |
|
| Q |
209 |
aagttttgataattgaagataaagagtagaattatcta |
246 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
8930672 |
aagttttgaaaattgaagataaagaatagaattgtcta |
8930709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 8975649 - 8975419
Alignment:
| Q |
9 |
tctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaacacatgat |
108 |
Q |
| |
|
||||||||| |||||| ||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
|
|
| T |
8975649 |
tctctccaaatatcactgtatggagaaaatacaatttctgacccattataagataatttttgttgaccatataatttaggtctattagaaaacacatgat |
8975550 |
T |
|
| Q |
109 |
cattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttga |
208 |
Q |
| |
|
|||||| ||| || | |||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
8975549 |
cattgtttttcaacacttctttggcaatttcagctgaacaaacaacaatagctggtcttaaaccaagttgaagtgaaaatagaggaccatatatttttga |
8975450 |
T |
|
| Q |
209 |
aagttttgataattgaagataaagagtagaa |
239 |
Q |
| |
|
| || || ||||||||||||||| ||||| |
|
|
| T |
8975449 |
gaattgagaaaattgaagataaagattagaa |
8975419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 8972400 - 8972637
Alignment:
| Q |
9 |
tctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaacacatgat |
108 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||| |||| | |
|
|
| T |
8972400 |
tctctccaaaaatcactatattgagaaaataccatttctgacccattataagataatttttgttgaccatataatataggtctattagaaaaaacattac |
8972499 |
T |
|
| Q |
109 |
cattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttga |
208 |
Q |
| |
|
|||||||||| |||| |||||| ||||||| |||||||||||||||||| ||| | |||||||||||| ||||||||||| || ||||||| |||||| |
|
|
| T |
8972500 |
cattgtctttcaatacttcttttgcaatttcagctgaagaaacaacaatagcttgtcttaaaccaagtgaaagtgaaaatagaggaccatataattttga |
8972599 |
T |
|
| Q |
209 |
aagttttgataattgaagataaagagtagaattatcta |
246 |
Q |
| |
|
| || ||||||||||||||||| ||||| |||||| |
|
|
| T |
8972600 |
gaattgagataattgaagataaagcttagaaatatcta |
8972637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 8952560 - 8952361
Alignment:
| Q |
9 |
tctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaacacatgat |
108 |
Q |
| |
|
||||||||| ||||| |||| ||| ||| |||||||||| ||||||||| | ||| | | ||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
8952560 |
tctctccaaaaatcaccatatggagcaaaaacaatttctgacccattataacacaatatgttttgaccatatgatataggtctattagaaaacacatgat |
8952461 |
T |
|
| Q |
109 |
cattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttga |
208 |
Q |
| |
|
|||||| ||| |||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||| | || |||||||| ||||| |
|
|
| T |
8952460 |
cattgtttttgaatacttctttggcaatttcagctgaagaaacaacaatagctggtcttaaaccaagtttaagtgaaaacaaaggaccatatatctttga |
8952361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 9002495 - 9002642
Alignment:
| Q |
42 |
atttctgatccattataagataatttttgttggccatataggataggtctattacaaaacacatgatcattgtctttaaatatttctttggcaattttag |
141 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||| |||||||||||| |||||| || |||||| ||| |||| |||||| ||||||| | |
|
|
| T |
9002495 |
atttctgacccattataagacaacttttgttgaccatataatataggtctattagaaaacaattggtcattggttttcaatacttcttttgcaatttcgg |
9002594 |
T |
|
| Q |
142 |
ctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaata |
189 |
Q |
| |
|
| |||||||||||||| ||| ||||| |||||||||| |||||||| |
|
|
| T |
9002595 |
cagaagaaacaacaatagcttttcttaatccaagttgaattgaaaata |
9002642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 9027401 - 9027202
Alignment:
| Q |
9 |
tctctccaaggatcactatattgagaaaatgcaatttctgatccattataagataatttttgttggccatataggataggtctattacaaaacacatgat |
108 |
Q |
| |
|
||||||||| |||| | ||||| |||||| |||||| || || ||||||| ||||||||||| |||||| ||||||||| | |||||| ||| | |
|
|
| T |
9027401 |
tctctccaaaaatcagtgtattgtgaaaatataatttccgacccgttataagtcaatttttgttgagcatataatctaggtctatcagaaaacaaatggt |
9027302 |
T |
|
| Q |
109 |
cattgtctttaaatatttctttggcaattttagctgaagaaacaacaattgctggccttaaaccaagttgaagtgaaaatattggtccatatatttttga |
208 |
Q |
| |
|
||||| ||| |||| |||||| ||||||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
9027301 |
cattggttttcaatacttcttttgcaatttcagctgaagaaacaacaatagcttttcttaatccaagttgaattgaaaatagaggaccatatatctttga |
9027202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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