View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_low_26 (Length: 240)
Name: NF5726_low_26
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_26 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 32811102 - 32811187
Alignment:
| Q |
156 |
tgtccataactgcatgtgacttgacattgcttcataagtattcatagctaagatcct-aaaaacaaagaatattagaaccttaagc |
240 |
Q |
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| T |
32811102 |
tgtccataactgcatgtgacttgacattgcttcataagtattcatagctaagatcctaaaaaaaaaagaatattagaaccttaagc |
32811187 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 32811029 - 32811104
Alignment:
| Q |
5 |
atgtcgaagaatatgacaggaaaataaatgtgtgtgtccaactatgtagcacggacacttgcaagtaaaggtgtgt |
80 |
Q |
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| T |
32811029 |
atgtcaaagaaaatgacaggaaaatgaatgtgtgtgtccaactatgtagcacggacacttgcgagtaaaggtgtgt |
32811104 |
T |
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