View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_low_28 (Length: 237)

Name: NF5726_low_28
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_low_28
NF5726_low_28
[»] chr3 (46 HSPs)
chr3 (7-198)||(6749145-6749336)
chr3 (7-200)||(6472465-6472658)
chr3 (4-86)||(296610-296692)
chr3 (10-85)||(20841474-20841549)
chr3 (10-146)||(5493713-5493849)
chr3 (6-86)||(45759777-45759857)
chr3 (4-79)||(15638343-15638418)
chr3 (4-74)||(9588922-9588992)
chr3 (5-86)||(375899-375980)
chr3 (4-73)||(3751620-3751689)
chr3 (10-146)||(34668839-34668975)
chr3 (4-146)||(38750882-38751020)
chr3 (4-86)||(21934382-21934460)
chr3 (4-74)||(6512423-6512493)
chr3 (6-86)||(21915605-21915682)
chr3 (6-60)||(27817596-27817650)
chr3 (6-86)||(37030825-37030905)
chr3 (10-86)||(42735461-42735537)
chr3 (4-58)||(21959582-21959636)
chr3 (7-60)||(45667607-45667660)
chr3 (4-88)||(34824033-34824117)
chr3 (4-75)||(2440517-2440587)
chr3 (6-60)||(2093938-2093992)
chr3 (4-58)||(7259559-7259613)
chr3 (147-219)||(21934136-21934209)
chr3 (27-78)||(1272613-1272663)
chr3 (104-198)||(6512296-6512391)
chr3 (10-143)||(2599217-2599346)
chr3 (164-213)||(7259512-7259561)
chr3 (42-82)||(19229656-19229696)
chr3 (147-214)||(37030581-37030649)
chr3 (6-58)||(45646756-45646808)
chr3 (147-218)||(27817766-27817840)
chr3 (99-191)||(3751710-3751801)
chr3 (155-205)||(13779018-13779068)
chr3 (164-213)||(21959535-21959584)
chr3 (147-205)||(45667763-45667822)
chr3 (147-216)||(16237210-16237280)
chr3 (4-50)||(19578442-19578488)
chr3 (149-219)||(21915864-21915936)
chr3 (15-63)||(23701816-23701863)
chr3 (15-63)||(23720271-23720318)
chr3 (15-63)||(23738727-23738774)
chr3 (15-63)||(23772112-23772159)
chr3 (155-207)||(25841676-25841728)
chr3 (147-206)||(42735241-42735301)
[»] chr5 (33 HSPs)
chr5 (127-219)||(19133251-19133343)
chr5 (6-146)||(8544529-8544669)
chr5 (6-86)||(18413220-18413300)
chr5 (6-143)||(36437142-36437280)
chr5 (1-63)||(19133336-19133398)
chr5 (7-142)||(32474352-32474487)
chr5 (1-80)||(19931985-19932064)
chr5 (8-83)||(39614997-39615072)
chr5 (1-75)||(19922287-19922361)
chr5 (6-146)||(17201393-17201532)
chr5 (6-86)||(42673931-42674012)
chr5 (4-86)||(249375-249453)
chr5 (1-75)||(19925037-19925111)
chr5 (6-64)||(1583612-1583670)
chr5 (4-58)||(17558126-17558180)
chr5 (6-51)||(6428390-6428435)
chr5 (5-58)||(32717861-32717914)
chr5 (164-213)||(14655191-14655240)
chr5 (155-207)||(20202026-20202078)
chr5 (47-146)||(39585652-39585751)
chr5 (155-218)||(8544342-8544405)
chr5 (153-216)||(42673690-42673753)
chr5 (153-215)||(6428429-6428491)
chr5 (6-51)||(11992078-11992123)
chr5 (9-58)||(14655144-14655193)
chr5 (164-213)||(16365926-16365975)
chr5 (4-70)||(43346542-43346605)
chr5 (147-205)||(12436364-12436423)
chr5 (99-146)||(17201652-17201698)
chr5 (13-80)||(25613001-25613067)
chr5 (147-216)||(39585469-39585539)
chr5 (164-205)||(17558178-17558219)
chr5 (155-216)||(18412984-18413045)
[»] chr6 (17 HSPs)
chr6 (1-204)||(6110832-6111037)
chr6 (5-89)||(34259726-34259807)
chr6 (4-86)||(23410638-23410720)
chr6 (10-84)||(8049337-8049411)
chr6 (15-143)||(2437626-2437747)
chr6 (4-86)||(8461014-8461098)
chr6 (6-146)||(25056656-25056795)
chr6 (7-79)||(14093625-14093697)
chr6 (4-60)||(34889219-34889275)
chr6 (155-213)||(4666200-4666258)
chr6 (4-58)||(21527179-21527233)
chr6 (147-216)||(2437440-2437510)
chr6 (4-54)||(7972517-7972567)
chr6 (155-213)||(4184990-4185048)
chr6 (155-216)||(9353495-9353556)
chr6 (39-143)||(26252377-26252479)
chr6 (164-213)||(7972466-7972515)
[»] chr2 (38 HSPs)
chr2 (4-206)||(11084078-11084282)
chr2 (6-143)||(21252735-21252872)
chr2 (4-86)||(15507612-15507694)
chr2 (4-86)||(44898269-44898351)
chr2 (4-73)||(7486163-7486232)
chr2 (10-70)||(36243891-36243951)
chr2 (12-83)||(42872115-42872186)
chr2 (4-86)||(33024413-33024495)
chr2 (6-84)||(45273270-45273348)
chr2 (13-74)||(33659868-33659929)
chr2 (16-84)||(20171288-20171356)
chr2 (155-213)||(25965465-25965523)
chr2 (1-84)||(157926-158003)
chr2 (116-214)||(4316922-4317021)
chr2 (4-75)||(41541205-41541276)
chr2 (28-86)||(25714211-25714269)
chr2 (23-80)||(38589169-38589226)
chr2 (7-58)||(4959237-4959288)
chr2 (155-213)||(7485913-7485971)
chr2 (147-216)||(16806241-16806311)
chr2 (147-216)||(16845522-16845592)
chr2 (12-58)||(34424638-34424684)
chr2 (164-213)||(4959190-4959239)
chr2 (7-60)||(29408648-29408701)
chr2 (155-206)||(27746836-27746887)
chr2 (6-60)||(1397632-1397686)
chr2 (4-58)||(12412772-12412826)
chr2 (4-58)||(12424832-12424886)
chr2 (147-219)||(32113129-32113202)
chr2 (8-60)||(4144048-4144099)
chr2 (99-142)||(38589106-38589149)
chr2 (7-60)||(3309740-3309793)
chr2 (7-52)||(4316871-4316916)
chr2 (106-143)||(16806427-16806464)
chr2 (106-143)||(16845708-16845745)
chr2 (147-207)||(45273031-45273092)
chr2 (147-206)||(3309565-3309625)
chr2 (175-219)||(33024617-33024661)
[»] chr4 (32 HSPs)
chr4 (12-143)||(49263154-49263285)
chr4 (6-143)||(24073931-24074068)
chr4 (6-86)||(54982605-54982685)
chr4 (6-86)||(6949284-6949364)
chr4 (6-86)||(38044743-38044823)
chr4 (4-58)||(24538162-24538216)
chr4 (4-58)||(38434100-38434154)
chr4 (5-70)||(53370239-53370304)
chr4 (12-86)||(37209834-37209906)
chr4 (6-61)||(45666481-45666536)
chr4 (6-67)||(2492999-2493061)
chr4 (6-146)||(50721055-50721198)
chr4 (4-57)||(37371260-37371313)
chr4 (6-54)||(19443432-19443480)
chr4 (155-207)||(45635137-45635189)
chr4 (11-82)||(9089468-9089539)
chr4 (6-57)||(25493989-25494040)
chr4 (10-60)||(1821448-1821498)
chr4 (6-60)||(47944336-47944390)
chr4 (164-213)||(55343957-55344006)
chr4 (6-70)||(53393503-53393567)
chr4 (147-216)||(19443253-19443323)
chr4 (4-46)||(30913703-30913745)
chr4 (6-60)||(34031880-34031933)
chr4 (6-60)||(46195923-46195977)
chr4 (164-213)||(38434053-38434102)
chr4 (147-216)||(34031695-34031765)
chr4 (147-216)||(54982371-54982441)
chr4 (147-207)||(41502877-41502938)
chr4 (147-214)||(1821278-1821346)
chr4 (99-143)||(2493375-2493419)
chr4 (147-206)||(25494129-25494189)
[»] chr8 (35 HSPs)
chr8 (36-219)||(14896797-14896982)
chr8 (6-86)||(25400625-25400705)
chr8 (6-86)||(25496805-25496885)
chr8 (4-86)||(1358739-1358821)
chr8 (6-146)||(5870931-5871071)
chr8 (4-212)||(16599066-16599270)
chr8 (6-86)||(11087287-11087368)
chr8 (13-86)||(1256542-1256615)
chr8 (4-86)||(29315721-29315799)
chr8 (6-86)||(38457453-38457533)
chr8 (6-73)||(34146361-34146428)
chr8 (4-142)||(3741813-3741946)
chr8 (6-83)||(30887710-30887787)
chr8 (4-75)||(34039047-34039115)
chr8 (7-86)||(7695119-7695199)
chr8 (4-86)||(36682700-36682778)
chr8 (4-82)||(35318868-35318945)
chr8 (7-60)||(16393861-16393914)
chr8 (7-58)||(7578056-7578107)
chr8 (4-51)||(43026542-43026589)
chr8 (4-58)||(3443579-3443633)
chr8 (164-213)||(3443532-3443581)
chr8 (147-219)||(36682951-36683024)
chr8 (12-80)||(32233790-32233857)
chr8 (155-215)||(32234035-32234095)
chr8 (158-219)||(29315475-29315536)
chr8 (9-57)||(38401722-38401770)
chr8 (147-214)||(38401877-38401945)
chr8 (164-206)||(7578016-7578058)
chr8 (4-50)||(9455392-9455438)
chr8 (164-213)||(2742752-2742801)
chr8 (4-58)||(2742799-2742855)
chr8 (155-216)||(5871180-5871241)
chr8 (155-216)||(11087504-11087565)
chr8 (155-216)||(34146616-34146677)
[»] chr1 (23 HSPs)
chr1 (4-86)||(4395901-4395983)
chr1 (4-86)||(1674614-1674696)
chr1 (4-86)||(40519067-40519145)
chr1 (4-75)||(31622961-31623032)
chr1 (4-88)||(1394690-1394774)
chr1 (6-84)||(13254614-13254693)
chr1 (4-73)||(19269891-19269959)
chr1 (4-86)||(23699256-23699335)
chr1 (7-74)||(36319833-36319900)
chr1 (4-73)||(30280170-30280236)
chr1 (8-75)||(39386848-39386915)
chr1 (6-56)||(41116669-41116719)
chr1 (147-219)||(40518821-40518894)
chr1 (155-207)||(2656064-2656116)
chr1 (6-143)||(6295544-6295681)
chr1 (147-219)||(52415461-52415534)
chr1 (147-219)||(32769315-32769386)
chr1 (4-57)||(788133-788186)
chr1 (14-73)||(11237947-11238003)
chr1 (158-219)||(30280943-30281004)
chr1 (176-216)||(6295412-6295452)
chr1 (147-206)||(36319598-36319658)
chr1 (40-79)||(2016123-2016162)
[»] chr7 (29 HSPs)
chr7 (9-86)||(37124331-37124408)
chr7 (6-143)||(4567467-4567605)
chr7 (4-73)||(15643515-15643584)
chr7 (10-143)||(35792905-35793038)
chr7 (14-86)||(16196948-16197020)
chr7 (4-75)||(17269667-17269739)
chr7 (4-86)||(39427542-39427620)
chr7 (7-84)||(41689981-41690060)
chr7 (4-58)||(39432773-39432827)
chr7 (14-86)||(3835500-3835572)
chr7 (13-72)||(17269794-17269853)
chr7 (6-60)||(27723468-27723522)
chr7 (147-218)||(27723625-27723697)
chr7 (155-206)||(4678731-4678782)
chr7 (4-58)||(4962809-4962863)
chr7 (4-58)||(14771289-14771343)
chr7 (4-58)||(15221741-15221795)
chr7 (21-143)||(10534826-10534952)
chr7 (7-60)||(39617674-39617727)
chr7 (155-219)||(4567727-4567791)
chr7 (147-207)||(2271551-2271612)
chr7 (164-213)||(4962762-4962811)
chr7 (147-213)||(37124582-37124649)
chr7 (164-207)||(46671854-46671897)
chr7 (4-58)||(25290780-25290833)
chr7 (147-216)||(35792727-35792797)
chr7 (164-205)||(14771250-14771291)
chr7 (164-205)||(15221702-15221743)
chr7 (164-213)||(39430424-39430473)
[»] scaffold1986 (1 HSPs)
scaffold1986 (18-80)||(321-383)
[»] scaffold0242 (2 HSPs)
scaffold0242 (4-86)||(14958-15037)
scaffold0242 (4-86)||(23793-23872)
[»] scaffold0841 (2 HSPs)
scaffold0841 (28-86)||(4535-4593)
scaffold0841 (175-216)||(4374-4415)
[»] scaffold0005 (2 HSPs)
scaffold0005 (6-86)||(256897-256977)
scaffold0005 (155-206)||(272046-272097)
[»] scaffold1130 (2 HSPs)
scaffold1130 (4-51)||(537-584)
scaffold1130 (164-213)||(590-639)
[»] scaffold0188 (1 HSPs)
scaffold0188 (4-51)||(6296-6343)
[»] scaffold1327 (1 HSPs)
scaffold1327 (155-216)||(1118-1179)
[»] scaffold0006 (3 HSPs)
scaffold0006 (4-50)||(46466-46512)
scaffold0006 (164-213)||(46128-46177)
scaffold0006 (164-207)||(46416-46459)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 6749145 - 6749336
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccat 106  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||          |||| |||    
T  6749145 aagagttaaaattttataaataagatgagtagtagttgttaaaaatttcaagtgctaagtaaaagaacaaatctgagaaaga-aaaacaaaagacttcat 6749243  T
Q  107 gaatattctaaaggaagaaaaagtggaagactcgttgaaaattgactt-aaataattaaagagatatacacaatatttagaaaattgaaaatt 198  Q
    |||| ||| ||||||||||| |||||||||||| ||| |||||||||| |||||||||| ||||| | |||| |||||| |||||||| ||||    
T  6749244 gaatgttcaaaaggaagaaagagtggaagactcattggaaattgacttaaaataattaacgagatttgcacagtatttaaaaaattgacaatt 6749336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 6472658 - 6472465
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccat 106  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || ||||| |||          || | |||    
T  6472658 aagagttaaaattttataaataagatgagtagtagttgttaaaaatttcaagtgctaagtaaaagaacagatctgagaaaga-aaaacaaaagatttcat 6472560  T
Q  107 gaatattctaaaggaagaaaaagtggaagactcgttgaaaattgactt-aaataattaaagagatatacacaatatttagaaaattgaaaattat 200  Q
    |||| ||| ||||||||||| |||||||||||| ||| |||||||||| |||||||||| ||||| | ||||||||||| |||||||| ||||||    
T  6472559 gaatgttcaaaaggaagaaagagtggaagactcattggaaattgacttaaaataattaacgagatttgcacaatatttaaaaaattgacaattat 6472465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 296610 - 296692
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  296610 atgaatagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaaataaaaaaacagatttgagaga 296692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 20841474 - 20841549
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagag 85  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||    
T  20841474 agttaaaattctataaataagatgagtaacaattgttaaaaatttcaagtgcaaagtaaaagaacagatttgagag 20841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 5493713 - 5493849
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaa 109  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||            |||||||||||    
T  5493713 agttaaaattctataaataagatgagtagaaattgttaaaaaattcaagtgcaaagtaaaagaacatgtttgagagaagaaaaataaaagactccatgaa 5493812  T
Q  110 tattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
      ||| |||| ||||||||||| ||||||||||||||    
T  5493813 cgttcaaaagaaagaaaaagtgaaagactcgttgaaa 5493849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 45759857 - 45759777
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||| ||||    
T  45759857 gaagagttaaaattgtataaataagatgagtagcaattgttaaatatttcaagtgcaaagtgaaagaacatatttgtgaga 45759777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 15638418 - 15638343
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatt 79  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  15638418 atgaatagttaaaattcttaaaataagatgagtagtaattgttaaaaatatcatgtgcaaagtaaaagaacaaatt 15638343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 9588922 - 9588992
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaac 74  Q
    ||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  9588922 atgaatagttaaaattatataaataagatgagtaggaattattaaaaatttcaagtgcaaagtaaaagaac 9588992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 375899 - 375980
Alignment:
Q  5 tgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  375899 tgaatagttaaaattttataaataaaatgagcagtaattgttaaaaatttcaagtgcaaaataaaagaacatatttgggaga 375980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 3751620 - 3751689
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |||||    
T  3751620 atgaagagttaaaattctataaataagatgagtagtaatttttaaaaatttgaagtgaaaagtagaagaa 3751689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 34668839 - 34668975
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaa 109  Q
    |||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| || |||| |||||||||   |          |||||| |||    
T  34668839 agttaaaattctataaataagaagagtagcaatggttaaaaatttcaagtgcaaagtagaaaaacagatttgagaggaggaaaataaaaaactccacgaa 34668938  T
Q  110 tattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    | ||| ||| |||||||||||||||||||||||||||    
T  34668939 tgttcaaaaagaagaaaaagtggaagactcgttgaaa 34668975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 38751020 - 38750882
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactc 103  Q
    |||||||||||||||||||||||||||| || ||   |||||||||||||||||||| ||||||||||||| ||||||||||| |           ||||    
T  38751020 atgaagagttaaaattctataaataagacgaata---attgttaaaaatttcaagtgtaaagtaaaagaac-aatttgagagaaaaacaaataaaaactc 38750925  T
Q  104 catgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    ||||||| ||| ||||||||||| |||||||||||| ||||||    
T  38750924 catgaatgttcaaaaggaagaaagagtggaagactcattgaaa 38750882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 21934460 - 21934382
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||| |||| |||||||||||    
T  21934460 atgaagagttaaaattctataaataagatgaata---attgttaaaaatttcaagtgcaaagtaaatgaac-aatttgagaga 21934382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 6512493 - 6512423
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaac 74  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  6512493 atgaagagttaacattttataaataagatgaggagtagttgttaaaaatttcaagtgctaagtaaaagaac 6512423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 21915605 - 21915682
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||| |||||||    | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  21915605 gaagagttaaaattctatagataagat---aaataattgctaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 21915682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 27817596 - 27817650
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27817596 gaagagttaaaattctataaataagatgagtggtaattgttaaaaatttcaagtg 27817650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 37030905 - 37030825
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||| |||| |||||||||||  ||||||||||||||||||| ||||||||||| || | ||||||||||    
T  37030905 gaagagttaaaattcgataactaagatgagtatcaattgttaaaaatttcaagggcaaagtaaaataaaagatttgagaga 37030825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 42735537 - 42735461
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||| |||||||||||||||||||||  |||||||| |||||||||||||| ||||||| || ||||||||||||    
T  42735537 agttaagattctataaataagatgagtatcaattgttagaaatttcaagtgcagagtaaaaaaataaatttgagaga 42735461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 21959636 - 21959582
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  21959636 atgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 21959582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 45667607 - 45667660
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  45667607 aagagttaaaattctataaataagatgagtaacaattgttaaaaatttcaagtg 45667660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 34824117 - 34824033
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagaga 88  Q
    ||||| ||||| |||||||| ||||||||| ||||||||||||||||| |||||||||||| |   ||||||||||||| |||||    
T  34824117 atgaatagttataattctatgaataagatgggtagtaattgttaaaaaattcaagtgcaaaattttagaacaaatttgatagaga 34824033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 2440587 - 2440517
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||| |||||||||||||||| ||||||| ||||||| ||||||||| ||||| |||||||||||||||||    
T  2440587 atgaatagttaaaattctataa-taagatgggtagtaaatgttaaaaaattcaaatgcaaagtaaaagaaca 2440517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 2093938 - 2093992
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  2093938 gaagagttaaaattttataaataagatgagtaacaattgttaaaaatttcaagtg 2093992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 7259613 - 7259559
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  7259613 atgaagagttaaaattttataaataacatgagtagtacttgttaaaaatttcaag 7259559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 21934209 - 21934136
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||||| |||||||||||| | |||||||||||||||||| | |||| |||||||| |||||||||||    
T  21934209 attgacttaaattaattaaagagatgtgcacaatatttagaaaattaacaattgtttgttatgagagagagtgt 21934136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 1272613 - 1272663
Alignment:
Q  27 taagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaat 78  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1272613 taagatgagtagtaat-gttgaaaatttcaagtgcaaagtaaaagaacaaat 1272663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 6512391 - 6512296
Alignment:
Q  104 catgaatattctaaaggaagaaaaagtggaagactcgttgaaaattgactt-aaataattaaagagatatacacaatatttagaaaattgaaaatt 198  Q
    ||||||| ||| ||||||||||| |||||||| ||| ||| |||||||||| |||||||||||||||| | |  |||||||| |||||||| ||||    
T  6512391 catgaattttcaaaaggaagaaagagtggaaggctcattggaaattgacttaaaataattaaagagatttgctaaatatttaaaaaattgacaatt 6512296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 2599217 - 2599346
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnnga-ctccatga 108  Q
    ||||||||||||||||||||||| |     |||||||||||||| |||||| |||||||||||||| ||||||||| |||          | ||||||||    
T  2599217 agttaaaattctataaataagataac----aattgttaaaaattccaagtgtaaagtaaaagaacagatttgagag-gagaaaaataaaaaactccatga 2599311  T
Q  109 atattctaaaggaagaaaaagtggaagactcgttg 143  Q
    || ||| ||||||||| ||||||||||||||||||    
T  2599312 atgttcaaaaggaagagaaagtggaagactcgttg 2599346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 7259561 - 7259512
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  7259561 aagagatatgcacaatatttagaaaattgaaaattgtttgttatgagaga 7259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 19229696 - 19229656
Alignment:
Q  42 ttgttaaaaatttcaagtgcaaagtaaaagaacaaatttga 82  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19229696 ttgttaaaaatttcaagtgcaaagtaaaagaacagatttga 19229656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 37030649 - 37030581
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagag 214  Q
    ||||||||||| ||||| || |||| |||||||||||||||||||||| |||| |||||||| ||||||    
T  37030649 attgacttaaaataattgaaaagatgtacacaatatttagaaaattgacaattgtttgttatgagagag 37030581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 45646756 - 45646808
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||| ||||||||||| ||||||  ||||||||||||||||||    
T  45646756 gaagagttaaaattttataaataagacgagtagcgattgttaaaaatttcaag 45646808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 27817766 - 27817840
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttat--tagagagagtg 218  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| ||||||||  |||||||||||    
T  27817766 attgacttaaaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgttatgatagagagagtg 27817840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 3751710 - 3751801
Alignment:
Q  99 gactccatgaatattctaaaggaagaaaaagtggaagactcgttgaaaattgacttaaat-aattaaagagatatacacaatatttagaaaatt 191  Q
    |||||||||||||||| |||||||  ||||||| ||||||  ||| ||| |||||||||  ||||| |||||||| || |||||||||||||||    
T  3751710 gactccatgaatattcaaaaggaa--aaaagtgaaagactaattggaaactgacttaaaacaattagagagatatgcaaaatatttagaaaatt 3751801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 13779018 - 13779068
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgtt 205  Q
    |||||||||| || |||| ||||||||||||| ||||||||||||||||||    
T  13779018 aaataattaatgatatatgcacaatatttagagaattgaaaattatttgtt 13779068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 21959584 - 21959535
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| |||||    
T  21959584 aagaaatatgcacaatatttataaaattgaaaattatttgttatgagaga 21959535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 45667763 - 45667822
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgtt 205  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| ||||||    
T  45667763 attgacttaaaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgtt 45667822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 16237280 - 16237210
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||||||| ||||    |||||||||| |||||||| ||||||||||||| ||||||||    
T  16237280 attgacttaaaataattaaaaagatgcgtacaatatttaaaaaattgacaattatttgttatgagagagag 16237210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 19578442 - 19578488
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaa 50  Q
    ||||||||||||| || | ||||||| ||||||||||||||||||||    
T  19578442 atgaagagttaaatttttttaaataaaatgagtagtaattgttaaaa 19578488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 21915864 - 21915936
Alignment:
Q  149 tgacttaaat-aattaaagagatatacacaatattt-agaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||| |||||||||||| | |||||||||| | |||||||| |||| |||||||| | |||||||||    
T  21915864 tgacttaaattaattaaagagatgtgcacaatatttaaaaaaattgataattgtttgttataatagagagtgt 21915936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23701863 - 23701816
Alignment:
Q  15 aaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaa 63  Q
    |||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  23701863 aaattctataaataagatgagt-gacattgttaaaaatttcaaatgcaa 23701816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23720318 - 23720271
Alignment:
Q  15 aaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaa 63  Q
    |||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  23720318 aaattctataaataagatgagt-gacattgttaaaaatttcaaatgcaa 23720271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23738774 - 23738727
Alignment:
Q  15 aaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaa 63  Q
    |||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  23738774 aaattctataaataagatgagt-gacattgttaaaaatttcaaatgcaa 23738727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23772159 - 23772112
Alignment:
Q  15 aaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaa 63  Q
    |||||||||||||||||||||| |  ||||||||||||||||| |||||    
T  23772159 aaattctataaataagatgagt-gacattgttaaaaatttcaaatgcaa 23772112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 25841728 - 25841676
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    ||||||||||||| ||||  | ||||||||||||||| |||||| ||||||||    
T  25841728 aaataattaaagatatatgtaaaatatttagaaaattaaaaattgtttgttat 25841676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 42735301 - 42735241
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    ||||||||||| |||||||| ||| || ||||||||||| |||||||| |||| |||||||    
T  42735301 attgacttaaaataattaaaaagacatgcacaatatttaaaaaattgacaattctttgtta 42735241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 19133343 - 19133251
Alignment:
Q  127 aagtggaagactcgttgaaaattgacttaaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  19133343 aagtgcaagactcgttgaaaattgacttaaataattaaagagatgtgcacaatatttagaaaattgaaaattatttgttattagagagagtgt 19133251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 8544669 - 8544529
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||             ||| ||    
T  8544669 gaagagttaaaattctataaataagatgagtagcaactgttaaaaatttcaagtgtaaagtaaaagaacagatttgagagaagaaaaataaaatacttca 8544570  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    ||||| ||| ||||||||||| |||||||||||||||||||    
T  8544569 tgaatgttcaaaaggaagaaagagtggaagactcgttgaaa 8544529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 18413300 - 18413220
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  18413300 gaagagttaaaattctataaataagatgaatagaaattgttaaaaaattcaagtgcaaagtaaaagaacatatttgagaga 18413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 36437280 - 36437142
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagag-agagnnnnnnnnngactcc 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| | ||||||||| |||          |||| |    
T  36437280 gaagagttaaaattctataaataagatgagtagcaattgttaaaaatctcaagtgaaaagtaaaagaatatatttgagagaagaaaaataaaaagacttc 36437181  T
Q  105 atgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    |||||| ||| |||||||||||||||||||| |||||||    
T  36437180 atgaattttcaaaaggaagaaaaagtggaaggctcgttg 36437142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19133398 - 19133336
Alignment:
Q  1 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19133398 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaa 19133336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 32474352 - 32474487
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccat 106  Q
    |||||||||||||||| ||||||||||| ||  ||||||||||| ||||||||||||||||||| |||||||||||||||            ||||||||    
T  32474352 aagagttaaaattctaaaaataagatgaataacaattgttaaaagtttcaagtgcaaagtaaaacaacaaatttgagagaagaaaaatcaaagactccat 32474451  T
Q  107 gaatattctaaaggaagaaaaagtggaagactcgtt 142  Q
    |||| ||| |||||||||||||||| ||||||||||    
T  32474452 gaatgttcaaaaggaagaaaaagtgaaagactcgtt 32474487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19931985 - 19932064
Alignment:
Q  1 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaattt 80  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||    
T  19931985 tcaatgaagagttaaaactctataaataagatgagcagtaattgttaaaaatttcaagtgtaaaggaaaagaacatattt 19932064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 39614997 - 39615072
Alignment:
Q  8 agagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgag 83  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  39614997 agagttaaaattctataaataagataaatagtaattgttaaaaatttgaagtgcaaagtaaaagaacagatttgag 39615072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19922287 - 19922361
Alignment:
Q  1 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  19922287 tcaatgaagagttaaaactctataaataagatgatcagtaattgttaaaaatttcaagtgtaaaggaaaagaaca 19922361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 17201393 - 17201532
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| |||| | || |||||||||| |||| |||||            |||||||    
T  17201393 gaagagttaaaattctataaataagatgagtaataattgtt-aaaattttaagttcgaactaaaagaacatatttaagagaagaaaattaaaagactcca 17201491  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    ||||| ||| |||| ||||||||||||||||||||||||||    
T  17201492 tgaatgttcaaaagaaagaaaaagtggaagactcgttgaaa 17201532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 42674012 - 42673931
Alignment:
Q  6 gaagagttaaaa-ttctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||| |||||    
T  42674012 gaagagttaaaaattctataaataagatgaataacaattgttaaaaatttcaagtgcaaagtaaaagaacatatttaagaga 42673931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 249453 - 249375
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||||| |||||||||||||| ||   |||||||||||||||||||||||||||||||||| |||||||||||    
T  249453 atgaagagttaaaattttataaataagatgaata---attgttaaaaatttcaagtgcaaagtaaaagaac-aatttgagaga 249375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19925037 - 19925111
Alignment:
Q  1 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  19925037 tcaatgaagagttaaaactctatgaataagatgatcagtaattgttaaaaatttcaagtgtaaaggaaaagaaca 19925111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 1583612 - 1583670
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaa 64  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  1583612 gaagagttaaaattctataataaagatgagtagcaattgttaaaaatttcaagtgcaaa 1583670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 17558126 - 17558180
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  17558126 atgaagagttaaaattctataaataacatgagtagtacatgttaaaaatttcaag 17558180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 6428390 - 6428435
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaa 51  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  6428390 gaagagttaaaattctataaataaaatgagtagtaattgttaaaaa 6428435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 32717914 - 32717861
Alignment:
Q  5 tgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||||||||    
T  32717914 tgaagagttaaaattctataaataacataagtagtacttgttaaaaatttcaag 32717861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 14655191 - 14655240
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  14655191 aagagatatgcacaatatttagaaaattgaaaattgtttgttatgagaga 14655240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 20202026 - 20202078
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    |||||||||| || |||| ||||||||||||||||||||||||| ||||||||    
T  20202026 aaataattaatgatatatgcacaatatttagaaaattgaaaattgtttgttat 20202078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 39585751 - 39585652
Alignment:
Q  47 aaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    |||||||||||||||||||||||| |||| ||||||||||            |||||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  39585751 aaaaatttcaagtgcaaagtaaaataacatatttgagagaagaaaaataaaagactccattaatgttcaaaaggaagaaaaagtggaagactcattgaaa 39585652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 8544405 - 8544342
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtg 218  Q
    ||||||||||| |||| | |||||||||||||||||||| |||| |||| ||| ||||||||||    
T  8544405 aaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgatatgagagagagtg 8544342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 42673753 - 42673690
Alignment:
Q  153 ttaaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||||| |||| | ||||||||||| |||||||| |||| |||||||| ||||||||    
T  42673753 ttaaataattaaaaagatgtgcacaatatttaaaaaattgacaattgtttgttatgagagagag 42673690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 6428429 - 6428491
Alignment:
Q  153 ttaaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagaga 215  Q
    ||||| ||||||| |||||| |||| ||||||||||||||| |||| |||||||| |||||||    
T  6428429 ttaaaaaattaaaaagatatgcacattatttagaaaattgacaattgtttgttatgagagaga 6428491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 11992123 - 11992078
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaa 51  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  11992123 gaagaattaaaattctataaataagatgagtagcaattgtttaaaa 11992078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 14655144 - 14655193
Alignment:
Q  9 gagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    ||||||||||||||||||||| |||||||||| ||  |||||||||||||    
T  14655144 gagttaaaattctataaataacatgagtagtacttaataaaaatttcaag 14655193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 16365926 - 16365975
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||| |||||    
T  16365926 aagagatatgcacaatatttagaaaattggaaattgtttgttatgagaga 16365975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 43346605 - 43346542
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaa 70  Q
    |||||||||||||||| ||||| ||||| || ||   ||||||||||||||||||| ||||||||||    
T  43346605 atgaagagttaaaattatataattaagacgaata---attgttaaaaatttcaagtacaaagtaaaa 43346542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 12436423 - 12436364
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgtt 205  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| ||||||    
T  12436423 attgacttaaaataattaaaaagatgtgcacaatatttagaaaattgataattgtttgtt 12436364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 17201652 - 17201698
Alignment:
Q  99 gactccatgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||    
T  17201652 gactccatgaatgtt-taaagaaagaaaaagtggaagactcgttgaaa 17201698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 25613067 - 25613001
Alignment:
Q  13 taaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaattt 80  Q
    ||||||| |||||| || |||| ||| ||||||||| ||||||||||| ||||||||||| |||||||    
T  25613067 taaaattttataaaaaa-atgaatagcaattgttaacaatttcaagtgaaaagtaaaagagcaaattt 25613001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 39585539 - 39585469
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| ||| |||| |||||| |||||||||||||||||| | || | |||||||| ||||||||    
T  39585539 attgacttaaaataactaaaaagatatgcacaatatttagaaaattaacaaatgtttgttatgagagagag 39585469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 17558178 - 17558219
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgtt 205  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  17558178 aagagatatgcataatatttagaaaattgaaaattgtttgtt 17558219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 18413045 - 18412984
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||| ||| |||| | |||||||||||||||||||| |||| |||||||| | ||||||    
T  18413045 aaataatgaaaaagatgtgcacaatatttagaaaattgacaattgtttgttatgaaagagag 18412984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 6111037 - 6110832
Alignment:
Q  1 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagag--agagnnnnnnnnn 98  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| | || ||||||  | |              
T  6111037 tcaatgaagagttaaaattttataaataagatgagtagtaattgttaaaaatttaaagtgtaaagtaaaagaatagatatgagagaaacaaaaataaaaa 6110938  T
Q  99 gactccatgaatattctaaaggaagaaaaagtggaagactcgttgaaaattgacttaaataattaaagagatatacacaatatttagaaaattgaaaatt 198  Q
     ||||||||||||||| ||||||||  | |||  ||||||| ||  |||||||||||||||||||||||||| | ||||||||||  |||||||||||||    
T  6110937 aactccatgaatattcaaaaggaagtgatagttaaagactcattttaaattgacttaaataattaaagagatgtgcacaatattttaaaaattgaaaatt 6110838  T
Q  199 atttgt 204  Q
    ||||||    
T  6110837 atttgt 6110832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 34259726 - 34259807
Alignment:
Q  5 tgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagag 89  Q
    |||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34259726 tgaagagttaaaattctataaataagatgaata---attgttaaaaatttcaagtgcaaagtaaaagaacatatttgagagagag 34259807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 23410638 - 23410720
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| ||||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  23410638 atgaatagttacaattttataaataagataagtagtaattgttaaaaatttcaaatgcaaagtaaaagaacaaatgtgagaga 23410720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 8049337 - 8049411
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 84  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||    
T  8049337 agttaaaattctataaaaaagatgagtagcaattgttaaaaatttcaagtgtaaagtaaaagtacagatttgaga 8049411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 2437747 - 2437626
Alignment:
Q  15 aaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaatattc 114  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||| || |||||||| |            |||||||||||| |||    
T  2437747 aaattctataaataagatgagtaacaattgttaaaaatttcaagtgcgaagtaaaagatcagatttgagaaa-------tgcaagactccatgaatgttc 2437655  T
Q  115 taaaggaagaaaaagtggaagactcgttg 143  Q
     ||||||||||||||||||||| ||||||    
T  2437654 aaaaggaagaaaaagtggaagattcgttg 2437626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 8461014 - 8461098
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagta--attgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| ||||||||||||||||||||||| |||||||  ||||||||||| |||||||||||||||||| |||| || |||||||    
T  8461014 atgaatagttaaaattctataaataagataagtagtataattgttaaaaacttcaagtgcaaagtaaaataacagatctgagaga 8461098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 25056656 - 25056795
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||| | || ||||||||||||||| |||||            |||||||    
T  25056656 gaagagttaaaattctataaataagatgagtaacaattgtt-aaaatttcaagttcgaactaaaagaacaaatttaagagaagaaaaataaaagactcca 25056754  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    ||||| ||| || | |||||||||| |||||||||||||||    
T  25056755 tgaatgttcaaaggaaagaaaaagttgaagactcgttgaaa 25056795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 14093697 - 14093625
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatt 79  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||  ||||||||||||    
T  14093697 aagagttaaaattctataaataagatgagtaacaatttttaaaaatttcaagcgcaaagcgaaagaacaaatt 14093625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 34889219 - 34889275
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34889219 atgaatagttaaaattctataaataagatgagtaataattgttaaaaatttcaagtg 34889275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 4666200 - 4666258
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||    
T  4666200 aaataattaaagagatatgcacaatatttaaaaaattgaaaattgtttgttatgagaga 4666258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 21527233 - 21527179
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  21527233 atgaagagttaaaattctatgaataacatgagtagtacttgttaaaaatttcaag 21527179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 2437510 - 2437440
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| |||||||| ||||||||    
T  2437510 attgacttaaaataattaaaaagatttgcacaatatttagaaaattgacaattgtttgttataagagagag 2437440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 7972567 - 7972517
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaattt 54  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||||||    
T  7972567 atgaagagttaaaattctatgaataacatgagtagtacttgttaaaaattt 7972517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 4184990 - 4185048
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||||||| |||| || |||||||| ||||||||||||| |||||||| |||||    
T  4184990 aaataattaaagaaatatgcataatatttaaaaaattgaaaattgtttgttatgagaga 4185048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 9353495 - 9353556
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| | |||| |||||||||||||||||||| |||| |||| ||| ||||||||    
T  9353495 aaataattaaaaaaatatgcacaatatttagaaaattgacaattgtttgatatgagagagag 9353556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 26252479 - 26252377
Alignment:
Q  39 taattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaatattctaaaggaagaaaaagtggaagact 138  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| |           |||| |||||| ||| |||||||||||||||||||||||    
T  26252479 taattgttaaaa-tttcaagtgcaaagtaaaagaa-aaatttgagagaaaatcaaataaaaactctatgaatgttcaaaaggaagaaaaagtggaagact 26252382  T
Q  139 cgttg 143  Q
     ||||    
T  26252381 agttg 26252377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 7972515 - 7972466
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    |||||||||  | |||||||||||||||||||||| |||||||| |||||    
T  7972515 aagagatatgtataatatttagaaaattgaaaattgtttgttatgagaga 7972466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 11084078 - 11084282
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagag--agagnnnnnnnnngac 101  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||  | |          |||    
T  11084078 atgaatagttaaaattc-ataaataagatgagtagtaattgttaaaaatttcaaatgcaaagtaaaagaacagatctgagagaaaaataaaataaaagac 11084176  T
Q  102 tccatgaatattctaaaggaagaaaaagtggaagactcgttgaaaattgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattat 200  Q
    ||||||||| ||| ||  | ||||| |||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||| |||||||| ||| ||    
T  11084177 tccatgaatgttcaaattgtagaaagagtggaagactcattgaaaattgacttaaattaattaaagagatgtgcacaatatttaaaaaattgacaatcat 11084276  T
Q  201 ttgtta 206  Q
    ||||||    
T  11084277 ttgtta 11084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 21252735 - 21252872
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||| ||||||            |||||||    
T  21252735 gaagagttaaaattctataaataagatgagtaacaattgttaaaaatttcaagtacaaagtaaaagaacatattcgagagaagaataatgaaagactcca 21252834  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    |||||| || |||| |||||||||| ||||||||||||    
T  21252835 tgaataatcaaaagaaagaaaaagttgaagactcgttg 21252872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 15507612 - 15507694
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||    
T  15507612 atgaatagttaaaatactataaataagatgagtaataattgttaaaaatttcaagtgcaaagtaaacgaacatatctgagaga 15507694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 44898269 - 44898351
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||||||||||||||||| | | | ||||||||||||| || ||||||||||||||||||||||| |||||||    
T  44898269 atgaagagttaaaattctataaataagaggggcaataattgttaaaaaatttaagtgcaaagtaaaagaacaaatctgagaga 44898351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 7486232 - 7486163
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||    
T  7486232 atgaagagttaaaattctataaataagatgaataatacttgttaaaaattgcaagtgcaaagtaaaagaa 7486163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 36243951 - 36243891
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaa 70  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  36243951 agttaaaattctataaataagatgagtaataattgttaaaaatttcaagtgaaaagtaaaa 36243891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 42872186 - 42872115
Alignment:
Q  12 ttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgag 83  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  42872186 ttaaaattttataaatcagatgagtaataattgttaaaaatttcaagtgtaaagtaaaagaacaaatgtgag 42872115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 33024413 - 33024495
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| |||||||||| |||||| || ||||||| |||| |||||||||||||||||||||||||||||||| || |||||||    
T  33024413 atgaatagttaaaattttataaacaaaatgagtattaatcgttaaaaatttcaagtgcaaagtaaaagaacatatctgagaga 33024495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 45273348 - 45273270
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 84  Q
    ||||||||||||| ||| |||||||||||| |  ||||| |||||||||||||||||||||||||||||| ||||||||    
T  45273348 gaagagttaaaatcctacaaataagatgagcaaaaattgctaaaaatttcaagtgcaaagtaaaagaacatatttgaga 45273270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33659868 - 33659929
Alignment:
Q  13 taaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaac 74  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  33659868 taaaattctataaataagataagtagtaattgttaaaaatttaaagtgcaaagttaaagaac 33659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 20171356 - 20171288
Alignment:
Q  16 aattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 84  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| || |||||    
T  20171356 aattctataaataagaaaagtagtaattgttaaaattttcaagtgcaaagtaaaagaacatatctgaga 20171288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 25965523 - 25965465
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  25965523 aaataattaaagagatatgcacaatatttagaaaattgaaaattgtttgttatgagaga 25965465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 158003 - 157926
Alignment:
Q  1 tcaatgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 84  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||      |||||||||||||||||||| || |||||    
T  158003 tcaatgaagagttaaaattttataaataagacgagtagtaattgttaaa------aagtgcaaagtaaaagaacatatatgaga 157926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 4316922 - 4317021
Alignment:
Q  116 aaaggaagaaaaagtggaagactcgttgaaaattgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagag 214  Q
    ||||||||||| |||||||||||| |||  |||||||||||| |||||||| | || | |||| ||||||||||||||| |||| |||||||| ||||||    
T  4316922 aaaggaagaaagagtggaagactcattggtaattgacttaaaataattaaaaaaatgtgcacactatttagaaaattgacaattgtttgttatgagagag 4317021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 41541205 - 41541276
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||  |||||||||    
T  41541205 atgaatagttaaagttctataaataagatgcgtattaattgttaaaaatttcaagtgctaaagaaaagaaca 41541276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 25714269 - 25714211
Alignment:
Q  28 aagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||    
T  25714269 aagatgagtagtaattgttaaaaatttcaagtgcaaaattaaagaacagatctgagaga 25714211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 38589226 - 38589169
Alignment:
Q  23 taaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaattt 80  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||    
T  38589226 taaataagacgagtagcagttgttaaaaatttcaagtacaaagtaaaagaacaaattt 38589169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 4959288 - 4959237
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    ||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  4959288 aagagttaaaattctataaataacatgagtagtacttgttataaatttcaag 4959237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 7485971 - 7485913
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    |||||||||||||||||| |||||||||||||||||| |||||  |||||||| |||||    
T  7485971 aaataattaaagagatatgcacaatatttagaaaattcaaaatcgtttgttatgagaga 7485913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 16806311 - 16806241
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| |||||||| ||||||||    
T  16806311 attgacttaaaataattaaatagatgtccacaatatttagaaaattgacaattgtttgttatgagagagag 16806241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 16845592 - 16845522
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| |||||||| ||||||||    
T  16845592 attgacttaaaataattaaatagatgtccacaatatttagaaaattgacaattgtttgttatgagagagag 16845522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 34424684 - 34424638
Alignment:
Q  12 ttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||    
T  34424684 ttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 34424638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 4959239 - 4959190
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  4959239 aagagatatgcacaatatttagaaaattgaaaattgtttgttatgagaga 4959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 29408701 - 29408648
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    ||||||||||||||||||||||| |||||||  |||||||||| ||||||||||    
T  29408701 aagagttaaaattctataaataaaatgagtaacaattgttaaagatttcaagtg 29408648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 27746836 - 27746887
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    ||||||||||| || ||| ||||||||||||||||||||||||| |||||||    
T  27746836 aaataattaaataggtatgcacaatatttagaaaattgaaaattgtttgtta 27746887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 1397632 - 1397686
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||| ||||||||||||||||||||||||| |  |||||||| ||||||||||||    
T  1397632 gaagtgttaaaattctataaataagatgaggaacaattgttacaaatttcaagtg 1397686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12412772 - 12412826
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| |||| || || ||||| |||||||||||    
T  12412772 atgaagagttaaaattctataaataaaatgattattacttgttgaaaatttcaag 12412826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12424832 - 12424886
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| |||| || || ||||| |||||||||||    
T  12424832 atgaagagttaaaattctataaataaaatgattattacttgttgaaaatttcaag 12424886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 32113202 - 32113129
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||||| || ||||||||| | |||||||| || |||||||| |||| |||||||| |||||||||||    
T  32113202 attgacttaaattaaataaagagatgtgcacaatatctaaaaaattgacaattgtttgttatgagagagagtgt 32113129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 4144048 - 4144099
Alignment:
Q  8 agagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||| ||||| ||||||||||||||||| | ||||||||||||||||||||    
T  4144048 agagttgaaattatataaataagatgagtaat-attgttaaaaatttcaagtg 4144099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 38589149 - 38589106
Alignment:
Q  99 gactccatgaatattctaaaggaagaaaaagtggaagactcgtt 142  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||    
T  38589149 gactccataaatgttcaaaaggaagaaaaagtggaagactcgtt 38589106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 3309793 - 3309740
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    ||||||| |||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  3309793 aagagtttaaattctaaaaataagataagtaacaattattaaaaatttcaagtg 3309740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 4316871 - 4316916
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaat 52  Q
    |||| ||||||||||| ||||||||||| |||| ||||||||||||    
T  4316871 aagacttaaaattctacaaataagatgaatagtcattgttaaaaat 4316916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 16806464 - 16806427
Alignment:
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  16806464 tgaatgttcaaaaggaagaaaaagtggaagactcgttg 16806427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 16845745 - 16845708
Alignment:
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  16845745 tgaatgttcaaaaggaagaaaaagtggaagactcgttg 16845708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 45273092 - 45273031
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    ||||||||||| ||||| || |||| | |||||||||||||||||||| |||| ||||||||    
T  45273092 attgacttaaaataatttaaaagatgtgcacaatatttagaaaattgacaattgtttgttat 45273031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 3309625 - 3309565
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    ||||||||||| |||| ||| |||| | |||||||||||||||||||| |||| |||||||    
T  3309625 attgacttaaaataatcaaaaagatgtgcacaatatttagaaaattgacaattgtttgtta 3309565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 33024617 - 33024661
Alignment:
Q  175 acaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    ||||||||||||||||||| |||  ||| ||||||||||||||||    
T  33024617 acaatatttagaaaattgacaatagtttattattagagagagtgt 33024661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 49263154 - 49263285
Alignment:
Q  12 ttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaata 111  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||            ||||||||||||     
T  49263154 ttaaaattctataaataagatgagtagcaattgttaaaaatttcaagtgtaaagtaaaagaacaaatttgagagaagaaaaataaaagactccatgaatg 49263253  T
Q  112 ttctaaaggaagaaaaagtggaagactcgttg 143  Q
    ||| || |||| ||||||||||||||||||||    
T  49263254 ttcaaatggaaaaaaaagtggaagactcgttg 49263285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 24074068 - 24073931
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||            |||||||    
T  24074068 gaagagttaaaattctagaaataagatgagtaacaattgttaaaaatctcaagtgcaaagtaaaagaacaaatttgagagaagaaaaataaaagactcca 24073969  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    ||||| ||| |||||||| |||| ||||||||||||||    
T  24073968 tgaatgttcaaaaggaagtaaaaatggaagactcgttg 24073931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 54982685 - 54982605
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||| ||||||||||    
T  54982685 gaagagttaaaattctataaataagatgagtaacaattgttaaaaatttcaattgcaaagtaaaaaaacagatttgagaga 54982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 6949284 - 6949364
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6949284 gaagatttaaaattctataaataagaagagtaacaattgttaaaaatttcaagtgcaaagtaaaacaacagatttgagaga 6949364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 38044823 - 38044743
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  38044823 gaagagttaaaattatataaataagatggatagaaattgttaaaaatttcaagtgcaaagtaaaaaaacagatttgagaga 38044743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 24538216 - 24538162
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  24538216 atgaagacttaaaattctataaataacatgagtagtaattgttaaaaatttcaag 24538162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 38434154 - 38434100
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  38434154 atgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 38434100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 53370304 - 53370239
Alignment:
Q  5 tgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaa 70  Q
    |||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||    
T  53370304 tgaatagttaaaattctataaataagataagtagtcatcgttaaaaatttcaagtgcagagtaaaa 53370239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 37209906 - 37209834
Alignment:
Q  12 ttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||  | |||||||||||||| ||||||||||    
T  37209906 ttaaaattctataaataagatgagtagcaattg--aaaaatttcaaaggtaaagtaaaagaacagatttgagaga 37209834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 45666481 - 45666536
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgc 61  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  45666481 gaagagttaaaattctataaataagatgagtaacaattgttaaaattttcaagtgc 45666536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 2492999 - 2493061
Alignment:
Q  6 gaagagttaaaa-ttctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagta 67  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  2492999 gaagagttaaaaattctataaaaaagatgagtagcaattgttaaaaatttcaagtgtaaagta 2493061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 50721055 - 50721198
Alignment:
Q  6 gaagagttaaaattctataaataa---gatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngact 102  Q
    ||||||||||||||||||||| ||   ||| ||||| |||| | ||||| || |||||||||||||||||||| ||||||||||            ||||    
T  50721055 gaagagttaaaattctataaaaaaaaagattagtagcaattttaaaaaaattaaagtgcaaagtaaaagaacagatttgagagaagaaaaataaaagact 50721154  T
Q  103 ccatgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    || ||||| ||| ||| |||||||||||||||||||||||||||    
T  50721155 ccgtgaatgttcaaaaagaagaaaaagtggaagactcgttgaaa 50721198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 37371313 - 37371260
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaa 57  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  37371313 atgaaaagttaaaattctataaataacatgagtagtacttgttaaaaatttcaa 37371260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 19443480 - 19443432
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaattt 54  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||    
T  19443480 gaagagttaaaattctataaataagatgagtaacaattgttaaaaattt 19443432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 45635189 - 45635137
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    |||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  45635189 aaataattaaagagatatgcacaatatttagaaaatttaaaattgtttgttat 45635137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 9089539 - 9089468
Alignment:
Q  11 gttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttga 82  Q
    ||||| ||||| |||| ||||| ||||| |||||||||||| |||||||||||||||||||| || ||||||    
T  9089539 gttaagattctttaaaaaagattagtagcaattgttaaaaaattcaagtgcaaagtaaaagatcagatttga 9089468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 25493989 - 25494040
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaa 57  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  25493989 gaagagttaaaattatataaataagatgagtaacaattgttaaaaatttcaa 25494040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 1821498 - 1821448
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  1821498 agttaaaattctataaataaaatgagtaacaattgttaaaaatttcaagtg 1821448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 47944390 - 47944336
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||||||||||| |||||||||||||| ||  |||||||||||||||||||||    
T  47944390 gaagagttaaaattatataaataagatgaataaaaattgttaaaaatttcaagtg 47944336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 55343957 - 55344006
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  55343957 aagagatatccacaatatttagaaaattgaaaattgtttgttataagaga 55344006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 53393503 - 53393567
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaa 70  Q
    |||||||||||||| ||||||| |||| ||||  ||||||||||||||||||| ||| |||||||    
T  53393503 gaagagttaaaattttataaatgagataagtaacaattgttaaaaatttcaagagcagagtaaaa 53393567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 19443323 - 19443253
Alignment:
Q  147 attgactta-aataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||| |||||||||| |||| | | |||||||||||||||||| |||| |||||||| ||||||||    
T  19443323 attgacttacaataattaaaaagatgtgctcaatatttagaaaattgacaattgtttgttatgagagagag 19443253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 30913703 - 30913745
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgtt 46  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  30913703 atgaatagttaaaattctataaataagatgattagtaattgtt 30913745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 34031933 - 34031880
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||||||||||||||||||| | |||||| ||||||| |||||||||||||||    
T  34031933 gaagagttaaaattctataaatgaaatgagt-gtaattgataaaaatttcaagtg 34031880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 46195923 - 46195977
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||||||||||||||||||| | ||||||   |||||||||||||||||||||    
T  46195923 gaagagttaaaattctataaattatatgagtgacaattgttaaaaatttcaagtg 46195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 38434102 - 38434053
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||| |||||    
T  38434102 aagagatatgcacaatatttagaaaattggaaattgtttgttatgagaga 38434053  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 34031765 - 34031695
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    |||||||||||| ||||||| |||| | ||||||||||| |||||||| |||| ||| |||| ||||||||    
T  34031765 attgacttaaattaattaaaaagatgtgcacaatatttaaaaaattgacaattgtttattatgagagagag 34031695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 54982441 - 54982371
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||| | |||| |||| ||| ||||||||    
T  54982441 attgacttaaaataattaaaaagatgtgcacaatatttagaaaattaacaattgtttggtatgagagagag 54982371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 41502877 - 41502938
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    |||||||||||| |||||||||| | | |||||||||| ||||||||| |||| ||||||||    
T  41502877 attgacttaaattaattaaagagttgtgcacaatatttcgaaaattgacaattgtttgttat 41502938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 1821346 - 1821278
Alignment:
Q  147 attgactta-aataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagag 214  Q
    ||||||||| ||||||||||  ||| | ||||||||||| |||||||| |||| |||||||| ||||||    
T  1821346 attgacttacaataattaaaatgatgtgcacaatatttataaaattgacaattgtttgttatgagagag 1821278  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 2493375 - 2493419
Alignment:
Q  99 gactccatgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    |||| ||||||| ||| |||||||||||||||| |||||||||||    
T  2493375 gactacatgaatcttcaaaaggaagaaaaagtgcaagactcgttg 2493419  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 25494129 - 25494189
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    ||||||||||| |||||||| |||| | ||| |||||||||||||||| |||| |||||||    
T  25494129 attgacttaaaataattaaaaagatgtgcacgatatttagaaaattgacaattgtttgtta 25494189  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 14896797 - 14896982
Alignment:
Q  36 tagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnn-gactccatgaatattctaaaggaagaaaaagtggaa 134  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||| |           ||||||||||||  || ||||||||||| |||||||    
T  14896797 tagtaattgttaaaaatttcaagtgcaaagtgaaagaacagatctgagagaaaaataaataaaagactccatgaattatcaaaaggaagaaagagtggaa 14896896  T
Q  135 gactcgttgaaaattgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    ||||| ||| ||||||||||||| ||||| ||||||| |  ||||||||||||||||||| |||| |||||||| ||||| |||||    
T  14896897 gactcattggaaattgacttaaattaattgaagagatgtgtacaatatttagaaaattgacaattgtttgttatgagagaaagtgt 14896982  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 25400625 - 25400705
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  25400625 gaagagtttaaattctataaataagatgagtagcagttgttaaaaattttaagtgcaaagtaaaagaacaaatttgagaga 25400705  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 25496805 - 25496885
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  25496805 gaagagtttaaattctataaataagatgagtagcagttgttaaaaattttaagtgcaaagtaaaagaacaaatttgagaga 25496885  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 1358821 - 1358739
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  1358821 atgaatagttaaaattctatgaataagatgagtggtaattgttaaaaaattcaagtgcaaagtaaaagaacaaatctgagaga 1358739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 5870931 - 5871071
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| |||| |||||            |||||||    
T  5870931 gaagagttaaaattctataaataagatgagtaacaattgttaaaaatttcaagtgcaaagtaaaaaaacagatttaagagaagaaaaataaaagactcca 5871030  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttgaaa 146  Q
    ||||| ||| ||||||||||| | |||||||||| ||||||    
T  5871031 tgaatgttcaaaaggaagaaataatggaagactcattgaaa 5871071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 212
Target Start/End: Complemental strand, 16599270 - 16599066
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaat-ttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngact 102  Q
    ||||| |||||||||| |||| ||||||||||||||||||||||||||  || ||||||||| |||||| ||| |||||||| | |          ||||    
T  16599270 atgaaaagttaaaattttatacataagatgagtagtaattgttaaaaaaatttaagtgcaaa-taaaaggacagatttgagataaa--aaataaaagact 16599174  T
Q  103 ccatgaatattctaaaggaagaaaaagtggaagactcgttgaaaattgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatt 201  Q
    || ||| ||||| ||||||||||| ||||||||| |||    ||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||    
T  16599173 ccgtgattattcaaaaggaagaaagagtggaagattcgg---aaattgacttaaaataattaaagagatgtgcacaatatttagaaaattgataattatt 16599077  T
Q  202 tgttattagag 212  Q
    |||||| ||||    
T  16599076 tgttatgagag 16599066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 11087287 - 11087368
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgc-aaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||| |||||||||| |||||    
T  11087287 gaagagttaaaattctataaataagataagtaacaattgttaaaaatttcaagtgcaaaagtaaatgaacaaattttagaga 11087368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 1256615 - 1256542
Alignment:
Q  13 taaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||| |||||||  | ||||||||||||||||  |||||||||||||||||||||||||||    
T  1256615 taaaattctataaataaaatgagtatcatttgttaaaaatttcaatagcaaagtaaaagaacaaatttgagaga 1256542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 29315799 - 29315721
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||||||||||||||||| || ||   |||||||||||||||||||| ||||||||||||| |||||||||||    
T  29315799 atgaagagttaaaattctataaataagacgaata---attgttaaaaatttcaagtgtaaagtaaaagaac-aatttgagaga 29315721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 38457453 - 38457533
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||| ||||||||||||||  |  | |||||||||||||||||||||||||||||||| | ||||||||||    
T  38457453 gaagagttaaaattttataaataagatgaacaacagttgttaaaaatttcaagtgcaaagtaaaagaatagatttgagaga 38457533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 34146361 - 34146428
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||    
T  34146361 gaagatttaaaattctataaataagatgagtaacaattgttaaaaatttcaaattcaaagtaaaagaa 34146428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 3741813 - 3741946
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactc 103  Q
    ||||||||||||||||||||||||||||||   | |||||| | ||| ||||||||||||||||||||||| ||||||||||| |           ||||    
T  3741813 atgaagagttaaaattctataaataagatg---aataattgct-aaattttcaagtgcaaagtaaaagaac-aatttgagagaaaaacaaataaaaactc 3741907  T
Q  104 catgaatattctaaaggaagaaaaagtggaagactcgtt 142  Q
    ||||||| ||| ||||||||||| |||||||||||||||    
T  3741908 catgaatgttcaaaaggaagaaagagtggaagactcgtt 3741946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 30887787 - 30887710
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgag 83  Q
    ||||||||||||||||||||||||||||| ||  ||||||| ||||||| ||| ||| ||||| ||||||||||||||    
T  30887787 gaagagttaaaattctataaataagatgaatatcaattgttcaaaatttaaagggcagagtaatagaacaaatttgag 30887710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 34039047 - 34039115
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||| |||||||||||||||||||||| |||||||   |||||||||||||||||||||| ||||||||||    
T  34039047 atgaatagttaaaattctataaataagacgagtagt---tgttaaaaatttcaagtgcaaaataaaagaaca 34039115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 7695199 - 7695119
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagt-aaaagaacaaatttgagaga 86  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||| | ||||||| | ||||||||||    
T  7695199 aagagttaaaattctataaataagatgagtaacaatttttaaaaatttcaagtgtaaaataaaaagaatagatttgagaga 7695119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 36682700 - 36682778
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||||| |||||||||||||| ||   ||||||||||||||||||| ||||||||| |||| |||||||||||    
T  36682700 atgaagagttaaaattttataaataagatgaata---attgttaaaaatttcaagtacaaagtaaatgaac-aatttgagaga 36682778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 35318868 - 35318945
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttga 82  Q
    ||||||||||||||||| ||||||||||| ||||  | ||||||||||||||||| ||||| ||||||||||| |||||    
T  35318868 atgaagagttaaaattccataaataagatcagtaaca-ttgttaaaaatttcaagcgcaaaataaaagaacaattttga 35318945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 16393861 - 16393914
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  16393861 aagagttaaaattctataaataagaagagtagcaatcgttaaaaatttcaagtg 16393914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 7578107 - 7578056
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||| |||||||||| |||||||||| |||||||||||||||||    
T  7578107 aagagttaaaatactataaataacatgagtagtacttgttaaaaatttcaag 7578056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 43026589 - 43026542
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaa 51  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  43026589 atgaagagttaaaattctataaataagaaaagtagtaattgttaaaaa 43026542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 3443633 - 3443579
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  3443633 atgaaaagttaaaattctataaataatatgagtagtacttgttaaaaattccaag 3443579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 3443581 - 3443532
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  3443581 aagagatatgcacaatatttagaaaattgaaaattgtttgttataagaga 3443532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 36682951 - 36683024
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||||| |||||||||||| | | |||||||||||||||| | |||| |||||||| |||||||||||    
T  36682951 attgacttaaattaattaaagagatgtgcgcaatatttagaaaattaacaattgtttgttatgagagagagtgt 36683024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 32233790 - 32233857
Alignment:
Q  12 ttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaattt 80  Q
    ||||||||||||||||||||||||||  ||||||| |||| ||||||||| ||||||| ||||| ||||    
T  32233790 ttaaaattctataaataagatgagtaacaattgtt-aaaacttcaagtgcgaagtaaaggaacatattt 32233857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 32234035 - 32234095
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagaga 215  Q
    ||||||||||| |||| | |||||||||||||||||||| |||| |||||||| |||||||    
T  32234035 aaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgttataagagaga 32234095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 29315536 - 29315475
Alignment:
Q  158 taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    ||||||||||||| | ||| ||||||| |||||||| |||| |||||||| |||||||||||    
T  29315536 taattaaagagatgtgcacgatatttaaaaaattgacaattgtttgttatgagagagagtgt 29315475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 38401722 - 38401770
Alignment:
Q  9 gagttaaaattctataaataagatgagtagtaattgttaaaaatttcaa 57  Q
    |||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  38401722 gagttacaattctataaataagatgggtaacaattgttaaaaatttcaa 38401770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 38401877 - 38401945
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagag 214  Q
    |||||||||||| ||||||| |||| | ||||||||||||||| |||| |||| |||||||| ||||||    
T  38401877 attgacttaaattaattaaaaagatgtgcacaatatttagaaagttgacaattgtttgttatgagagag 38401945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 7578058 - 7578016
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    ||||||||| |||||||||||||||||| |||||| |||||||    
T  7578058 aagagatatgcacaatatttagaaaattaaaaattgtttgtta 7578016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 9455392 - 9455438
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaa 50  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||    
T  9455392 atgaagaattaaaattctataaataacattagtagtacttgttaaaa 9455438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 2742801 - 2742752
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| || |||||||| ||||||||||||| |||||||| |||||    
T  2742801 aagagatatgcataatatttataaaattgaaaattgtttgttatgagaga 2742752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 2742855 - 2742799
Alignment:
Q  4 atgaagagttaaaattctataaataagatgag--tagtaattgttaaaaatttcaag 58  Q
    |||||||||| | ||||||||||||| |||||  ||||| |||||||||||||||||    
T  2742855 atgaagagtttatattctataaataacatgagtatagtacttgttaaaaatttcaag 2742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 5871180 - 5871241
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||| | |||||||||||||||||||| |||| |||  ||| ||||||||    
T  5871180 aaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttcatatgagagagag 5871241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 11087504 - 11087565
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||| | ||||||||||| |||||||| |||| |||||||| || |||||    
T  11087504 aaataattaaaaagatgtgcacaatatttaaaaaattgacaattgtttgttatgagtgagag 11087565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 34146616 - 34146677
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||| ||||||||||||| |||||| | |||| |||| ||| ||||||||    
T  34146616 aaataattaaaaagatgtacacaatatttaaaaaattcacaattgtttgatatgagagagag 34146677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 4395983 - 4395901
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||    
T  4395983 atgaatagttaaaattctataaataagatgaatagtaattgttaaaaatttcaagtgcaaagtaaaagaacatatctgagaga 4395901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 1674696 - 1674614
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||    
T  1674696 atgaaaagttaaaattctataaataagatgagtaatacttgttaaaaatttcaagtgcaaagtaaaagaacatatctgagaga 1674614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 40519145 - 40519067
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||| |||||||||||    
T  40519145 atgaagagttaaaattctataaataagatgaata---attgttaaaaatttcaagtgcaaagtaaaagaac-aatttgagaga 40519067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 31623032 - 31622961
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  31623032 atgaagagttaaaattttataaataagatgagtggtacttgttaaaaatttcaagtgtaaagtaaaagaaca 31622961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 1394774 - 1394690
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagaga 88  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |  |||||||||||||| |||||    
T  1394774 atgaatagttaaaattctatgaataagatgggtagtaattgttaaaaaattcaagtgcaaaatttaagaacaaatttgatagaga 1394690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 13254693 - 13254614
Alignment:
Q  6 gaagagttaaaattct-ataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 84  Q
    |||||||||||||| | ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  13254693 gaagagttaaaatttttataaaaaagatgagtagcaattgttaaaaatttaaagtgcaaagtaaaagaacatatttgaga 13254614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 19269891 - 19269959
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||    
T  19269891 atgaatagttaaaattctataaataagatgagtagtaattgtt-aaaatttcaagtgcatagttaaagaa 19269959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 23699335 - 23699256
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||||||||| |||||||||| ||   ||||||||||| || |||||||||||||||||||| ||||||||||    
T  23699335 atgaagagttaaaattctatgaataagatgaata---attgttaaaaaatttaagtgcaaagtaaaagaacagatttgagaga 23699256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 36319900 - 36319833
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaac 74  Q
    |||||||||||||||||||||  || |||||| ||| |||||||||||||||||||||||||||||||    
T  36319900 aagagttaaaattctataaatttgacgagtagcaatagttaaaaatttcaagtgcaaagtaaaagaac 36319833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 30280170 - 30280236
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    |||||||||||||||| ||||||||||||    | |||||||||||||||||||||||||||||||||||    
T  30280170 atgaagagttaaaattttataaataagat---caataattgttaaaaatttcaagtgcaaagtaaaagaa 30280236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 39386848 - 39386915
Alignment:
Q  8 agagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||||||||||||||||||||||||| ||  ||||||| || ||||||| |||||||||||||||||    
T  39386848 agagttaaaattctataaataagatgaataacaattgttgaatatttcaaatgcaaagtaaaagaaca 39386915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 41116669 - 41116719
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttca 56  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  41116669 gaagagttaaaattctataaataagatgagtagcatttgttaaaaatttca 41116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 40518894 - 40518821
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||||| |||||||||||| | |||||||||||||||||| | |||| |||||||| |||||||||||    
T  40518894 attgacttaaattaattaaagagatgtgcacaatatttagaaaattaacaattgtttgttatgagagagagtgt 40518821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 2656064 - 2656116
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    |||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  2656064 aaataattaaagagatatgcacaatatttagaaaatttaaaattgtttgttat 2656116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 6295681 - 6295544
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactcca 105  Q
    ||||| |||||||||||| || ||||| ||||  ||| ||||||| |||||||||| |||||||| |||| ||||| ||||            |||||||    
T  6295681 gaagacttaaaattctattaaaaagattagtaacaatggttaaaattttcaagtgctaagtaaaataacatatttgcgagaagaaaaataaaagactcca 6295582  T
Q  106 tgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    ||||| ||| ||||||||||||||||||||| ||||||    
T  6295581 tgaatcttcaaaaggaagaaaaagtggaagattcgttg 6295544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 52415461 - 52415534
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||| |||| |||||||  ||||| |||||    
T  52415461 attgacttaaattaattaaagagatgtgcacaatatttagaaaattgacaattgtttgttaggagagaaagtgt 52415534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 32769315 - 32769386
Alignment:
Q  147 attgacttaaat-aattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    |||||||||||| |||||||||||| | ||  ||||||| |||||||| ||||||||||||| |||||||||||    
T  32769315 attgacttaaattaattaaagagatgtgca--atatttaaaaaattgacaattatttgttatgagagagagtgt 32769386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 788186 - 788133
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaa 57  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||| ||||||    
T  788186 atgaagagttaaaattctacaaataacatgagtagtccttgttaaaattttcaa 788133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 11238003 - 11237947
Alignment:
Q  14 aaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    |||| ||||||||||| | |||||||   |||||||||||||||||||||||||||||||    
T  11238003 aaaaatctataaataatacgagtagt---tgttaaaaatttcaagtgcaaagtaaaagaa 11237947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 30280943 - 30281004
Alignment:
Q  158 taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    ||||||||||||| | ||||||||||| |||||| | |||| |||||||| |||||||||||    
T  30280943 taattaaagagatgtgcacaatatttaaaaaattaacaattgtttgttatgagagagagtgt 30281004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 6295452 - 6295412
Alignment:
Q  176 caatatttagaaaattgaaaattatttgttattagagagag 216  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  6295452 caatatttagaaaattgacaattatttgttatgagagagag 6295412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 36319658 - 36319598
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    ||||||||||| |||||||| | |||||||||||||||| |||||||| |||| |||||||    
T  36319658 attgacttaaaataattaaaaaaatatacacaatatttaaaaaattgacaattgtttgtta 36319598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 2016162 - 2016123
Alignment:
Q  40 aattgttaaaaatttcaagtgcaaagtaaaagaacaaatt 79  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  2016162 aattgttaaaacttacaagtgcaaagtaaaagaacaaatt 2016123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 37124331 - 37124408
Alignment:
Q  9 gagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  37124331 gagttaaaattctataaaaaagatgagtagcatttgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 37124408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 4567467 - 4567605
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagt-aaaagaacaaatttgagagagagnnnnnnnnngactcc 104  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||             |||||    
T  4567467 gaagagttaaaattctataaataagatgagtagcaattgttaaaaatttcaagtgaaaagtaaaaagaacatatttgagagaataaaaataaaatactcc 4567566  T
Q  105 atgaatattctaaaggaagaaaaagtggaagactcgttg 143  Q
    |||||| ||| |||||||||||| |||||||||||||||    
T  4567567 atgaatgttcaaaaggaagaaaatgtggaagactcgttg 4567605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 15643515 - 15643584
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaa 73  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  15643515 atgaagagttaaaattctataaataagatgaatagtactttttaaaaatttcaagtgcaaagtaaaagaa 15643584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 35793038 - 35792905
Alignment:
Q  10 agttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagagagagnnnnnnnnngactccatgaa 109  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||  |||||||||            |||||||||||    
T  35793038 agttaaaattctataaataagatgagtagaaattgttaaaatattcaagtgtaaagtaaaagaacatgtttgagagaagaaaaataaaagactccatgaa 35792939  T
Q  110 tattctaaaggaagaaaaagtggaagactcgttg 143  Q
    | ||| |||| ||||||||||| |||||||||||    
T  35792938 tgttcaaaagaaagaaaaagtgaaagactcgttg 35792905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 16196948 - 16197020
Alignment:
Q  14 aaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  16196948 aaaattctataaataagatgagtatcaatttttaaaaacttcaagtgcaaagtaaaagaacatatttgagaga 16197020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 17269667 - 17269739
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagt-aattgttaaaaatttcaagtgcaaagtaaaagaaca 75  Q
    ||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||    
T  17269667 atgaatagttaaaattctataaataagatgaataattaattgttaaaaatttcaagtgcaaagtaaaagaaca 17269739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 39427542 - 39427620
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||| |||| |||||||||||    
T  39427542 atgaagagttaaaattctataaataagatgaata---attgttaaaaatttcaagtgcaaagtaaatgaac-aatttgagaga 39427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 41689981 - 41690060
Alignment:
Q  7 aagagttaaaattctata--aataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 84  Q
    ||||||||||||| ||||  |||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||    
T  41689981 aagagttaaaattgtatataaataagatgagtaacgattattaaaaatttcaagtgcaaagtaaaagaacaaatttgaga 41690060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 39432773 - 39432827
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  39432773 atgaagagttaaaattctataaataacatgagtagtacttgttaaaaatttcaag 39432827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 3835572 - 3835500
Alignment:
Q  14 aaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||  ||||| |||||||| ||||||||||    
T  3835572 aaaattctataaataagttgaatagcaattgttaaaaatttcaagtctaaagttaaagaacagatttgagaga 3835500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 17269794 - 17269853
Alignment:
Q  13 taaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaaga 72  Q
    |||||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  17269794 taaaattccataaataagatgagtagtaattgttaaaaaaattaagtgcaaagtaaaaga 17269853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 27723468 - 27723522
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  27723468 gaagagctaaaattctataaataagatgagtaacaattgttaaaaatttcaagtg 27723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 27723625 - 27723697
Alignment:
Q  147 attgactta-aataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtg 218  Q
    ||||||||| |||||||||| |||| | |||||||||||||||||||| |||| |||||||| ||||||||||    
T  27723625 attgacttacaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgttatgagagagagtg 27723697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 4678731 - 4678782
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  4678731 aaataattaaagagatatgcacaatacttagaaaattgaaaattgtttgtta 4678782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 4962863 - 4962809
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| | |||||||    
T  4962863 atgaagagttaaaattctataaataacatgagtagtacttgttaatactttcaag 4962809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 14771343 - 14771289
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||    
T  14771343 atgaagagttaaaattctataaataacatgagtaatacatgttaaaaatttcaag 14771289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 15221795 - 15221741
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    |||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||    
T  15221795 atgaagagttaaaattctataaataacatgagtaatacatgttaaaaatttcaag 15221741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 10534952 - 10534826
Alignment:
Q  21 tataaataagatgagtagtaattgttaaaaat--ttcaagtgcaaagtaaaagaacaaatttgagagag--agnnnnnnnnngactccatgaatattcta 116  Q
    |||||||||||||||||| ||||||||||||   ||||||||||| |||||| |||| |||||||| |   |          |||||||||||||||| |    
T  10534952 tataaataagatgagtagcaattgttaaaaaaaattcaagtgcaatgtaaaaaaacagatttgagaaaagaaaaaaataaaagactccatgaatattcaa 10534853  T
Q  117 aaggaagaaaaagtggaagactcgttg 143  Q
    || ||||||||||||||||||||||||    
T  10534852 aaagaagaaaaagtggaagactcgttg 10534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 39617674 - 39617727
Alignment:
Q  7 aagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtg 60  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||||||||||||    
T  39617674 aagagttaaaattctataaattagatgagtagcgattgctaaaaatttcaagtg 39617727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 4567727 - 4567791
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagagtgt 219  Q
    ||||||||||| |||| | |||||||||||||||||| | |||| |||||||| |||||||||||    
T  4567727 aaataattaaaaagatgtgcacaatatttagaaaattaacaattgtttgttatgagagagagtgt 4567791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 2271612 - 2271551
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    ||||||||||| |||||||| |||| | |||||||||||||||||||| |||| ||||||||    
T  2271612 attgacttaaaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgttat 2271551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 4962811 - 4962762
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| |||||| |||||||||||||||||| |||||||| |||||    
T  4962811 aagagatatgcacaatttttagaaaattgaaaattgtttgttatgagaga 4962762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 37124582 - 37124649
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||||| |||||||| |||| | |||| ||||||||||||||| |||| |||||||| |||||    
T  37124582 attgacttaaaataattaaaaagatgtgcacattatttagaaaattgacaattgtttgttatgagaga 37124649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 46671897 - 46671854
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||    
T  46671897 aagagatatgcacaatatttaaaaaattgaaaattgtttgttat 46671854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 25290780 - 25290833
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaag 58  Q
    ||||||||||||| || ||||||||| |||||||||| ||| |||||||||||||    
T  25290780 atgaagagttaaattt-tataaataacatgagtagtacttgctaaaaatttcaag 25290833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 35792797 - 35792727
Alignment:
Q  147 attgacttaaa-taattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||||||| |||| | || ||||| ||||||||||| |||| |||||||| ||||||||    
T  35792797 attgacttaaaataattaaaaagatgtgcataatatctagaaaattgacaattgtttgttatgagagagag 35792727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 14771291 - 14771250
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgtt 205  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  14771291 aagagatatgcataatatttagaaaattgaaaattgtttgtt 14771250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 15221743 - 15221702
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgtt 205  Q
    ||||||||| || |||||||||||||||||||||| ||||||    
T  15221743 aagagatatgcataatatttagaaaattgaaaattgtttgtt 15221702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 39430473 - 39430424
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| |||||| |||||||||||| ||||| |||||||| |||||    
T  39430473 aagagatatgcacaatttttagaaaattgtaaattgtttgttatgagaga 39430424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 321 - 383
Alignment:
Q  18 ttctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaattt 80  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  321 ttctataaataagatgagtagtaatcgttaaaaatttcaagtgcaaagtaaaagaataaattt 383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 14958 - 15037
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||| || ||||||||||||||| | ||||| ||||    
T  14958 atgaagagttaaaattctataaataagatg---aataattgttaaaaatttaaaatgcaaagtaaaagaatagatttgggaga 15037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 23793 - 23872
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||||| || ||||||||||||||| | ||||| ||||    
T  23793 atgaagagttaaaattctataaataagatg---aataattgttaaaaatttaaaatgcaaagtaaaagaatagatttgggaga 23872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 4593 - 4535
Alignment:
Q  28 aagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||    
T  4593 aagatgagtagtaattgttaaaaatttcaagtgcaaaattaaagaacatatctgagaga 4535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 4415 - 4374
Alignment:
Q  175 acaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  4415 acaatatatagaaaattgacaattatttgttatgagagagag 4374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 256897 - 256977
Alignment:
Q  6 gaagagttaaaattctataaataagatgagtagtaattgttaaaaatttcaagtgcaaagtaaaagaacaaatttgagaga 86  Q
    ||||||||||||||||||||||||||| | ||  |||| |||||||  |||||| ||||||||||||||| |||| |||||    
T  256897 gaagagttaaaattctataaataagataaatatcaattattaaaaaagtcaagtacaaagtaaaagaacatatttaagaga 256977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 272097 - 272046
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgtta 206  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| |||||||    
T  272097 aaataattaaagagatatgcacaatatttaaaaaaatgaaaattgtttgtta 272046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 537 - 584
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaa 51  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  537 atgaagagttaaaattctataaataacatgagtagtacttgttaaaaa 584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 590 - 639
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| || |||||||||||||||||||||| |||||||| |||||    
T  590 aagagatatgcataatatttagaaaattgaaaattgtttgttatgagaga 639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 6343 - 6296
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaaa 51  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  6343 atgaatagttaaaattctataaataagattagtagtaattgttaaaaa 6296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 1118 - 1179
Alignment:
Q  155 aaataattaaagagatatacacaatatttagaaaattgaaaattatttgttattagagagag 216  Q
    ||||||||||| |||| | |||||||||||||||||||| |||| |||||||| ||||||||    
T  1118 aaataattaaaaagatgtgcacaatatttagaaaattgacaattgtttgttatgagagagag 1179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 46512 - 46466
Alignment:
Q  4 atgaagagttaaaattctataaataagatgagtagtaattgttaaaa 50  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||    
T  46512 atgaagagttaaaattctataaataacatgagtagcacttgttaaaa 46466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 46177 - 46128
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttattagaga 213  Q
    ||||||||| || |||||||||||||||||||||| |||||||| |||||    
T  46177 aagagatatgcataatatttagaaaattgaaaattgtttgttatgagaga 46128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 46459 - 46416
Alignment:
Q  164 aagagatatacacaatatttagaaaattgaaaattatttgttat 207  Q
    ||||||||| || |||||||||||||||||||||| ||||||||    
T  46459 aagagatatgcataatatttagaaaattgaaaattgtttgttat 46416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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