View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_low_3 (Length: 542)

Name: NF5726_low_3
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_low_3
NF5726_low_3
[»] chr1 (9 HSPs)
chr1 (16-400)||(32502894-32503271)
chr1 (213-336)||(32022616-32022741)
chr1 (158-309)||(48611676-48611829)
chr1 (160-334)||(19940548-19940723)
chr1 (213-306)||(34663092-34663185)
chr1 (216-285)||(45485044-45485113)
chr1 (216-291)||(4941199-4941274)
chr1 (490-525)||(32502769-32502804)
chr1 (165-292)||(1408615-1408741)
[»] chr2 (6 HSPs)
chr2 (211-335)||(9521064-9521182)
chr2 (183-330)||(27322708-27322854)
chr2 (213-293)||(9116405-9116485)
chr2 (213-286)||(16634421-16634494)
chr2 (211-280)||(3037421-3037490)
chr2 (161-199)||(19679448-19679486)
[»] chr3 (8 HSPs)
chr3 (185-336)||(8936054-8936205)
chr3 (213-293)||(43178597-43178677)
chr3 (334-400)||(4395315-4395381)
chr3 (213-309)||(42388719-42388815)
chr3 (166-309)||(36563038-36563180)
chr3 (213-293)||(1294908-1294988)
chr3 (166-309)||(36545134-36545276)
chr3 (93-159)||(4395256-4395323)
[»] chr8 (8 HSPs)
chr8 (159-335)||(9799198-9799375)
chr8 (213-330)||(40995823-40995942)
chr8 (211-280)||(7222846-7222913)
chr8 (160-293)||(30478408-30478540)
chr8 (216-283)||(45397512-45397578)
chr8 (212-293)||(12000142-12000223)
chr8 (290-335)||(35467786-35467831)
chr8 (216-308)||(15111876-15111968)
[»] scaffold0272 (1 HSPs)
scaffold0272 (160-330)||(6063-6235)
[»] chr4 (9 HSPs)
chr4 (159-336)||(19328775-19328950)
chr4 (334-400)||(18049945-18050011)
chr4 (211-308)||(27756450-27756547)
chr4 (216-293)||(3913647-3913724)
chr4 (216-336)||(38509880-38510000)
chr4 (93-159)||(18050003-18050070)
chr4 (212-274)||(4687363-4687425)
chr4 (216-293)||(3427861-3427938)
chr4 (216-274)||(25474657-25474715)
[»] chr7 (5 HSPs)
chr7 (213-309)||(30486952-30487048)
chr7 (166-293)||(37720509-37720635)
chr7 (211-306)||(28710390-28710485)
chr7 (356-400)||(22891022-22891066)
chr7 (156-200)||(40234663-40234707)
[»] chr5 (11 HSPs)
chr5 (183-330)||(28988361-28988512)
chr5 (165-329)||(21067574-21067739)
chr5 (187-336)||(24233126-24233277)
chr5 (213-282)||(39753318-39753387)
chr5 (211-284)||(19187144-19187217)
chr5 (156-285)||(36603640-36603769)
chr5 (183-303)||(14122887-14123006)
chr5 (211-283)||(1179953-1180025)
chr5 (216-280)||(38282505-38282569)
chr5 (211-292)||(39031661-39031741)
chr5 (236-308)||(6677065-6677137)
[»] scaffold0316 (1 HSPs)
scaffold0316 (158-293)||(1280-1415)
[»] chr6 (1 HSPs)
chr6 (211-285)||(17170671-17170745)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 4e-98; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 32503271 - 32502894
Alignment:
Q  16 atagagaaaatgaattacaaagtgatataccaaatgcatnnnnnnnntcttatcttagcccgcgcttatgattcaagggtgttgttgtttcatttagaac 115  Q
    |||||||||||||||||||||||||||||||||||||||        | |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  32503271 atagagaaaatgaattacaaagtgatataccaaatgcataaaaaaa-tattatcttagcccgcccttatgattcaagggtattgttgtttcatttagaac 32503173  T
Q  116 aaatctcaagagctggatatagtctacacgtatatttcgcaaatgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaag 215  Q
    ||||||||||||||  |||  ||||||||||||||||| |||||| ||||||||||| |||||||  | | ||||| ||||| |||||       ||||     
T  32503172 aaatctcaagagctatatacggtctacacgtatatttcccaaatgagtgatgttaactggtgccc-cgagacactgattaagaaaactaaaaaaagaaaa 32503074  T
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgggg 315  Q
    ||||||||||||||||| |||||||||| |||| |||| ||||||||||||||| |||||   ||||||||||||||| ||| ||||| | ||| |   |    
T  32503073 ttttaaaataaaagtaatactttttatattttttaaaaattgacagcacaaattccaatg---tacttaccacatttgactccttaactaatgccc--cg 32502979  T
Q  316 cactggttaacattatcctttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 400  Q
    || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32502978 cattggttaacattatccttcgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 32502894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 32022616 - 32022741
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg--ct 310  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||  |     
T  32022616 aagttttaaaataaaagtaatactttttatacttttaaaaagttgacagtacaattttcaatgtaatacttaccacatttgactccttaaccagtgcccc 32022715  T
Q  311 cggggcactggttaacattatccttt 336  Q
    ||| ||||||||||||||||||||||    
T  32022716 cggagcactggttaacattatccttt 32022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 309
Target Start/End: Original strand, 48611676 - 48611829
Alignment:
Q  158 atgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttg 257  Q
    |||||| ||||||||||||| |   |||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||| |||||||     
T  48611676 atgggtcatgttaaccggtgtctacggggcactggttaaggaaactaaaaaaagatagttttaaaataaaagtaacactttttatacttttgaaaagtta 48611775  T
Q  258 acagcacaaatttcaatgtaatact--taccacatttggctctttaaccagtgc 309  Q
    ||| ||||| || ||||||| ||||  ||| ||||||| |||||||| ||||||    
T  48611776 acaacacaagttgcaatgtagtacttatactacatttgactctttaatcagtgc 48611829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 334
Target Start/End: Original strand, 19940548 - 19940723
Alignment:
Q  160 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 259  Q
    |||| ||||||||||||||||  |||||||||||||||||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||    
T  19940548 gggtcatgttaaccggtgcccccggggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgac 19940646  T
Q  260 agcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctc--ggggcactggttaacattatcct 334  Q
    |||| || |||||||| ||||||||| |||||||  || ||||||||||| |  ||||||| |||||||||| ||||    
T  19940647 agcataagtttcaatgcaatacttactacatttgattccttaaccagtgccccgggggcaccggttaacattttcct 19940723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 213 - 306
Target Start/End: Complemental strand, 34663185 - 34663092
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccag 306  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| |||| || ||||  ||||||||||||||||| ||| ||||||||    
T  34663185 aagttttaaaatgaaagtaacactttttatacttttgaaaagttgacagtacaagttccaatacaatacttaccacatttgactccttaaccag 34663092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 45485044 - 45485113
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttac 285  Q
    ||||||||||||| |||||| |||||| ||||| | ||||||||| |||||||||||||| |||||||||    
T  45485044 ttttaaaataaaaataacacattttatgctttttagaagttgacaacacaaatttcaatgcaatacttac 45485113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 4941199 - 4941274
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatt 291  Q
    ||||||||||||| ||||||||||||| ||||| |  |||||||| ||||| |||||||| |||| |||| |||||    
T  4941199 ttttaaaataaaaataacactttttatgcttttgaggagttgacaacacaagtttcaatgcaataattactacatt 4941274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 525
Target Start/End: Complemental strand, 32502804 - 32502769
Alignment:
Q  490 ctttggttaaatacattgacagtatgtgacatatat 525  Q
    ||||||||||||||||||||||||||||||||||||    
T  32502804 ctttggttaaatacattgacagtatgtgacatatat 32502769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 1408741 - 1408615
Alignment:
Q  165 atgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcac 264  Q
    |||||||||  |||||| || ||| ||||||||||||||       |||||||||||||| ||| ||| |||||||||  |||| || |||||||| |||    
T  1408741 atgttaaccaatgccct-ggtgcattggttaaggaaactaaaaaaagaaagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacac 1408643  T
Q  265 aaatttcaatgtaatacttaccacattt 292  Q
    || || |||||||| | |||| ||||||    
T  1408642 aagttccaatgtaaaaattactacattt 1408615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 211 - 335
Target Start/End: Original strand, 9521064 - 9521182
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgct 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||         
T  9521064 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaagtttcaatgtaatacttatcacatttgactccttaacca----- 9521158  T
Q  311 cggggcactggttaacattatcctt 335  Q
     ||||||||||||||||||||||||    
T  9521159 -ggggcactggttaacattatcctt 9521182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 183 - 330
Target Start/End: Complemental strand, 27322854 - 27322708
Alignment:
Q  183 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 282  Q
    |||||||||||||||||||||       | |||||  ||||||||||||| ||||||||| |||||||| |||||||||||||| || ||||| ||||||    
T  27322854 ggggcactggttaaggaaactaaaaaaaggaagttcgaaaataaaagtaatactttttatgcttttcaagagttgacagcacaagttccaatgcaatact 27322755  T
Q  283 taccacatttggctctttaaccagtgctcggggcactggttaacatta 330  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  27322754 taccacatttgactccttaaccagtgc-cggggcactggttaacatta 27322708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 9116405 - 9116485
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 293  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||| ||||||||||||    
T  9116405 aagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaatatttaccacatttg 9116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 16634494 - 16634421
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttacc 286  Q
    ||||||||||||| ||| |||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  16634494 aagttttaaaatagaagcaacattttttatgcttttgaaaagttgacagcacaaattccaatgtaatacttacc 16634421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 3037490 - 3037421
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 280  Q
    |||| ||||||||| ||||||||||||||||||||||| |  |||||||| |||||||| ||||||||||    
T  3037490 gaaaattttaaaatcaaagtaacactttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 19679486 - 19679448
Alignment:
Q  161 ggtgatgttaaccggtgccctaggggcactggttaagga 199  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  19679486 ggtgttgttaaccggtgcccttggggcactggttaagga 19679448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 185 - 336
Target Start/End: Original strand, 8936054 - 8936205
Alignment:
Q  185 ggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactta 284  Q
    |||||||||||||||||||       | |||||||||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||     
T  8936054 ggcactggttaaggaaacttaaaaaaggaagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcacaagtttcaatgtaatacttg 8936153  T
Q  285 ccacatttggctctttaaccagtgctcggggcactggttaacattatccttt 336  Q
    ||||||||  ||| ||||||||||| || ||||||||||||||||| |||||    
T  8936154 ccacatttaactccttaaccagtgcccgaggcactggttaacattacccttt 8936205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 43178677 - 43178597
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 293  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||  |||||||    
T  43178677 aagttttaaaataaaagtaacattttttatacttttcaaaagttgacagtacaaatttcaatgtaatatttattacatttg 43178597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 4395315 - 4395381
Alignment:
Q  334 tttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4395315 tttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaa 4395381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 42388815 - 42388719
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc 309  Q
    ||||||||| || ||| |||||||||||||  |||| |||||||||||||||||||| ||||  ||||||||| ||||||| ||  |||||||||||    
T  42388815 aagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcacaaattccaatacaatacttactacatttgacttcttaaccagtgc 42388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 36563180 - 36563038
Alignment:
Q  166 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 265  Q
    |||||||||||||||  |||||||||||||| ||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||| ||||    
T  36563180 tgttaaccggtgcccccggggcactggttaaagaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacatcaca 36563082  T
Q  266 aatttcaatgtaatacttaccacatttggctctttaaccagtgc 309  Q
    | || ||||  ||||||||| |||||||  || |||||||||||    
T  36563081 agttacaatacaatacttactacatttgtttcgttaaccagtgc 36563038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 1294908 - 1294988
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 293  Q
    |||||||||||| ||||||||| |||||||  || | || || |||||||||||||||||||||||||||||  |||||||    
T  1294908 aagttttaaaatgaaagtaacattttttatgtttatgaagagctgacagcacaaatttcaatgtaatacttattacatttg 1294988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 36545134 - 36545276
Alignment:
Q  166 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 265  Q
    |||||||||||||||  |||||||||||||| ||||||       |||| ||||||| | ||| ||||||||||||| ||||| |  |||||||| ||||    
T  36545134 tgttaaccggtgcccccggggcactggttaaagaaactaaaaag-gaaaattttaaagtgaaaataacactttttatgcttttgaggagttgacatcaca 36545232  T
Q  266 aatttcaatgtaatacttaccacatttggctctttaaccagtgc 309  Q
    | || ||||  ||||||||| |||||||  || |||||||||||    
T  36545233 agttacaatacaatacttactacatttgtttcgttaaccagtgc 36545276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 4395256 - 4395323
Alignment:
Q  93 ggtgttgttg-tttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaat 159  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| || |||| ||||||    
T  4395256 ggtgttgttgctttgatttagaacaaatctcaagagttggatatggtctacacataaattttgcaaat 4395323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 9799198 - 9799375
Alignment:
Q  159 tgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 258  Q
    ||||| ||||||||| ||||||  | |||||||||||||||||||       |||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  9799198 tgggtcatgttaaccagtgcccccgtggcactggttaaggaaactaaaaattgaaagtcttaaaataaaggtaacactttttatacttttcaagagttga 9799297  T
Q  259 cagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg-ctcggggcactggttaacattatcctt 335  Q
    || ||||| || ||||||||||||||||||||||  ||| |||||||||| | | || ||||||||||||||| ||||    
T  9799298 caacacaagttccaatgtaatacttaccacatttaactccttaaccagtgcccctggacactggttaacattaccctt 9799375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 40995823 - 40995942
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcg 312  Q
    |||||||||||| ||| |||||||||||||  |||| || |||||||| |||||||||||||||||||||||| |||||||  ||||||| || |||||     
T  40995823 aagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattctttaatcaatgctct 40995922  T
Q  313 gg--gcactggttaacatta 330  Q
    ||  ||||||||||||||||    
T  40995923 ggaagcactggttaacatta 40995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 7222846 - 7222913
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 280  Q
    |||| |||||||||||||||||||||||||||  |||| || |||  |||||||||||||||||||||||    
T  7222846 gaaaattttaaaataaaagtaacactttttatgtttttgaatagt--acagcacaaatttcaatgtaata 7222913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 30478540 - 30478408
Alignment:
Q  160 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 259  Q
    |||| ||||||||||||||||| ||||||| |||||||||| ||       ||||| |||||||| ||| ||| ||||||| | ||||| | || |||||    
T  30478540 gggtcatgttaaccggtgccctcggggcacgggttaaggaacctaaaaaaggaaag-tttaaaatgaaaataatactttttgtgcttttgagaaattgac 30478442  T
Q  260 agcacaaatttcaatgtaatacttaccacatttg 293  Q
    || |||| |||||| | ||||||||| |||||||    
T  30478441 agtacaagtttcaacgcaatacttactacatttg 30478408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 45397578 - 45397512
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactt 283  Q
    ||||||||||||| |||||||||| | |||||| | ||||||||| || |||||||||||||||||||    
T  45397578 ttttaaaataaaaataacacttttaa-actttttagaagttgacaacaaaaatttcaatgtaatactt 45397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 12000142 - 12000223
Alignment:
Q  212 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 293  Q
    ||||||||||| | ||| ||| | ||||||| ||||| | | |||||||||||||||| ||||| || |||||| |||||||    
T  12000142 aaagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcacaaattccaatgcaacacttactacatttg 12000223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 35467786 - 35467831
Alignment:
Q  290 tttggctctttaaccagtgctcggggcactggttaacattatcctt 335  Q
    |||| ||| ||||||||||| |||||||||||||||||||| ||||    
T  35467786 tttgactccttaaccagtgcccggggcactggttaacattaccctt 35467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 15111876 - 15111968
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 308  Q
    ||||||||| ||| |||||||||||||| |||| |  |||||||| ||||| ||| ||| ||| |||||| | |||||  || ||||||||||    
T  15111876 ttttaaaatgaaaataacactttttatattttttaggagttgacaacacaagttttaatataaaacttactagatttgattccttaaccagtg 15111968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 160 - 330
Target Start/End: Complemental strand, 6235 - 6063
Alignment:
Q  160 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 259  Q
    |||| |||||||||||||  | |||||||| |||||||||||||       |||||||||||||| |||||||||||||||||  |||| ||||||||||    
T  6235 gggttatgttaaccggtgttccaggggcaccggttaaggaaactaaaaaaagaaagttttaaaatgaaagtaacactttttatgtttttgaaaagttgac 6136  T
Q  260 agcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcggg--gcactggttaacatta 330  Q
    |||| ||||| ||||| ||||||||| ||||||| ||| ||||||||||| | ||  ||||||||||||||||    
T  6135 agcataaattccaatgcaatacttactacatttgactccttaaccagtgccccggaagcactggttaacatta 6063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 159 - 336
Target Start/End: Complemental strand, 19328950 - 19328775
Alignment:
Q  159 tgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 258  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||         |||||||||||| ||||||||||||||||||||||| || ||||||    
T  19328950 tgggtcatgttaaccggtgccccgggggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacactttttatacttttgaagagttga 19328851  T
Q  259 cagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc--tcggggcactggttaacattatccttt 336  Q
     ||||||| || ||||||||||||||||||||||| ||  ||||||| |||  ||    |||||||||||||||||||||    
T  19328850 tagcacaagttccaatgtaatacttaccacatttgacttcttaaccaatgccttc----cactggttaacattatccttt 19328775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 18050011 - 18049945
Alignment:
Q  334 tttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 400  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  18050011 tttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaa 18049945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 27756547 - 27756450
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 308  Q
    |||| ||||||||| ||| ||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| |||||||  || ||||||||||    
T  27756547 gaaacttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattccttaaccagtg 27756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 3913724 - 3913647
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 293  Q
    ||||||||| ||||||||||||||||||||||| || |||| ||| ||||| || ||| |||||||||||||||||||    
T  3913724 ttttaaaatgaaagtaacactttttatacttttgaagagttaacaacacaagttccaacgtaatacttaccacatttg 3913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 336
Target Start/End: Complemental strand, 38510000 - 38509880
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgggg 315  Q
    ||||||||||||| |||||||||| |||||||| |  |||||||| ||||| || ||||| |||| |||  |||||||  || ||||| |||| || ||     
T  38510000 ttttaaaataaaaataacacttttcatacttttgaggagttgacaacacaagttccaatgcaatatttattacatttgattccttaacaagtgttccgga 38509901  T
Q  316 cactggttaacattatccttt 336  Q
    ||| ||||||||||| |||||    
T  38509900 caccggttaacattacccttt 38509880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 18050070 - 18050003
Alignment:
Q  93 ggtgttgttg-tttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaat 159  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| || |||| ||||||    
T  18050070 ggtgttgttgctttgatttagaacaaatctcaagagttggatatggtctacacataaattttgcaaat 18050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 4687363 - 4687425
Alignment:
Q  212 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaat 274  Q
    ||||||||||| ||||| ||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  4687363 aaagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcacaaattccaat 4687425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 3427938 - 3427861
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 293  Q
    ||||||||| ||| |||||||||||||  |||| || |||||||| ||||| |||||||  ||||||||| |||||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaagtttcaatacaatacttactacatttg 3427861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 25474657 - 25474715
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaat 274  Q
    ||||||||| ||| ||||| ||||||| ||||| || |||||||| |||||||||||||    
T  25474657 ttttaaaatgaaaataacattttttatgcttttgaagagttgacaacacaaatttcaat 25474715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 30486952 - 30487048
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc 309  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  30486952 aagttttaaaataaaagtaacattttttatattttttaaaagttgacggcacaaatttcaatgcaatacttacgacatttgactccttaaccagtgc 30487048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 293
Target Start/End: Original strand, 37720509 - 37720635
Alignment:
Q  166 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 265  Q
    ||||||||| |||||   ||||||||||||||||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||||||||    
T  37720509 tgttaaccgatgcccccagggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcaca 37720607  T
Q  266 aatttcaatgtaatacttaccacatttg 293  Q
      || ||||| ||||||||| |||||||    
T  37720608 tgttccaatgcaatacttactacatttg 37720635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 28710390 - 28710485
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccag 306  Q
    |||||||||||| | ||| ||||| |||||||  |||| |  ||||  ||||||||||| ||||||||||||||| |||||||  || ||||||||    
T  28710390 gaaagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcacaaattccaatgtaatacttactacatttgattccttaaccag 28710485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 22891066 - 22891022
Alignment:
Q  356 catcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 400  Q
    ||||||||| |||||||||||||||| ||  ||||||||||||||    
T  22891066 catcaaaatcatgatttgtgaattgtgcagcagatgtagaaagaa 22891022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 40234707 - 40234663
Alignment:
Q  156 aaatgggtgatgttaaccggtgccctaggggcactggttaaggaa 200  Q
    |||||||| |||||||||||||| |  ||||||||||||||||||    
T  40234707 aaatgggtcatgttaaccggtgctcccggggcactggttaaggaa 40234663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 330
Target Start/End: Original strand, 28988361 - 28988512
Alignment:
Q  183 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttata--cttttcaaaagttgacagcacaaatttcaatgtaata 280  Q
    |||||||||||||||||||||       | || ||||||||| ||||||||||||||| ||  ||||| ||||||||||  |||||||||||||||||||    
T  28988361 ggggcactggttaaggaaactaaaaaaaggaaattttaaaatgaaagtaacactttttttatgcttttgaaaagttgacgacacaaatttcaatgtaata 28988460  T
Q  281 cttaccacatttggctctttaaccagtg--ctcggggcactggttaacatta 330  Q
     |||||||||||| ||| ||||||||||  |  ||| |||||||||||||||    
T  28988461 attaccacatttgactccttaaccagtggccctgggacactggttaacatta 28988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 21067739 - 21067574
Alignment:
Q  165 atgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcac 264  Q
    |||||||||| ||||   || ||||||||||||||||||       | |||||||||||| ||||||  ||||||||| ||||| || || ||||| |||    
T  21067739 atgttaaccgatgcctccggtgcactggttaaggaaactcaaaaaaggaagttttaaaatgaaagtactactttttatgcttttgaagagatgacaacac 21067640  T
Q  265 aaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgg-ggcactggttaacatt 329  Q
    || |||||||||||||||||| ||||||| ||| |||||||||   ||| ||||||||||||||||    
T  21067639 aagtttcaatgtaatacttactacatttgactccttaaccagtttccggaggcactggttaacatt 21067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 336
Target Start/End: Complemental strand, 24233277 - 24233126
Alignment:
Q  187 cactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttacc 286  Q
    |||||||||||||||||       | |||||| || || |||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||      
T  24233277 cactggttaaggaaactaaaaaaaggaagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttccaatgcaatacttatt 24233178  T
Q  287 acatttggctctttaaccagtgctc--ggggcactggttaacattatccttt 336  Q
    ||||||| ||| ||||| |||| ||  ||| ||||||||||||||| |||||    
T  24233177 acatttgactccttaactagtgttccggggacactggttaacattacccttt 24233126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 39753318 - 39753387
Alignment:
Q  213 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 282  Q
    |||||||||||| ||||||| ||||||||| ||||| || |||||||||||||| |||||||||||||||    
T  39753318 aagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcacaagtttcaatgtaatact 39753387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 19187217 - 19187144
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactta 284  Q
    |||||||||||||| |||  |||||||||||| ||||| || |||||||| ||||||||||||||||| |||||    
T  19187217 gaaagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaaaactta 19187144  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 36603640 - 36603769
Alignment:
Q  156 aaatgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagt 255  Q
    |||||||| ||||||||| || |||  |||||||| ||||||||| ||       |||||||||||||| ||||| |||||||||||  |||| || |||    
T  36603640 aaatgggtcatgttaaccagtaccccgggggcactagttaaggaacctaaaaaaagaaagttttaaaatgaaagtgacactttttatgtttttgaagagt 36603739  T
Q  256 tgacagcacaaatttcaatgtaatacttac 285  Q
    ||||| ||||| || ||||| |||||||||    
T  36603740 tgacaacacaagttccaatgcaatacttac 36603769  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 303
Target Start/End: Complemental strand, 14123006 - 14122887
Alignment:
Q  183 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 282  Q
    |||||||||||||||||||||       | |||||||||||| ||||||||||||| ||| ||||| || ||||||||   || ||| ||| ||||||||    
T  14123006 ggggcactggttaaggaaactaaaagaaggaagttttaaaatgaaagtaacactttatatgcttttgaatagttgaca-atcatattccaaggtaatact 14122908  T
Q  283 taccacatttggctctttaac 303  Q
    ||||||||||| ||| |||||    
T  14122907 taccacatttgactccttaac 14122887  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 1180025 - 1179953
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactt 283  Q
    |||| ||||||||||||| |||||||||||||  |||| | ||||||||| || || ||||||||||||||||    
T  1180025 gaaaattttaaaataaaaataacactttttatgttttttagaagttgacaacataagtttcaatgtaatactt 1179953  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 38282569 - 38282505
Alignment:
Q  216 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 280  Q
    ||||||||| ||| |||||||||||||| |||| || |||||||| ||||||||| |||||||||    
T  38282569 ttttaaaatgaaaataacactttttatatttttaaagagttgacaacacaaattttaatgtaata 38282505  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 292
Target Start/End: Complemental strand, 39031741 - 39031661
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacattt 292  Q
    |||||||||||||| ||||||| | |||||||  |||| || | ||||||||| |||||| ||||||||| |||||||||||    
T  39031741 gaaagttttaaaatgaaagtaatattttttatg-ttttgaataattgacagcataaattttaatgtaatatttaccacattt 39031661  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 6677137 - 6677065
Alignment:
Q  236 tttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 308  Q
    ||||||| ||||| || |||||| | ||||||||||||| ||| |||||| |||||||  || ||||||||||    
T  6677137 tttttatgcttttgaagagttgagaacacaaatttcaatataaaacttactacatttgattccttaaccagtg 6677065  T

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Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 293
Target Start/End: Complemental strand, 1415 - 1280
Alignment:
Q  158 atgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttg 257  Q
    |||||| ||||||||||||||||  ||||||| || ||||||| ||       |||| ||||||||| ||| ||||| ||||||| ||||| |  |||||    
T  1415 atgggtcatgttaaccggtgcccctggggcacgggctaaggaacctaaaaaaagaaatttttaaaatgaaaataacattttttatgcttttgatgagttg 1316  T
Q  258 acagcacaaatttcaatgtaatacttaccacatttg 293  Q
    ||| ||||| |  ||||| ||||||||| |||||||    
T  1315 acaacacaagtaccaatgcaatacttactacatttg 1280  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 17170671 - 17170745
Alignment:
Q  211 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttac 285  Q
    |||| ||||||||||||| |||||||||||||| |||| |||| || ||| || |||||  ||||||| ||||||    
T  17170671 gaaaattttaaaataaaaataacactttttatatttttaaaaaattaacaacataaattctaatgtaaaacttac 17170745  T

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