View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5726_low_6 (Length: 420)

Name: NF5726_low_6
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5726_low_6
NF5726_low_6
[»] chr4 (26 HSPs)
chr4 (18-210)||(24481143-24481335)
chr4 (277-420)||(24481402-24481544)
chr4 (291-396)||(24481922-24482027)
chr4 (359-420)||(24421216-24421277)
chr4 (352-417)||(24476989-24477054)
chr4 (352-414)||(24420633-24420695)
chr4 (359-417)||(24477641-24477699)
chr4 (310-420)||(24482145-24482255)
chr4 (371-420)||(24421036-24421085)
chr4 (339-396)||(24481562-24481619)
chr4 (352-420)||(24470734-24470802)
chr4 (352-412)||(24477394-24477454)
chr4 (291-351)||(24481820-24481880)
chr4 (291-362)||(24482054-24482125)
chr4 (352-402)||(24420969-24421019)
chr4 (353-402)||(24420730-24420779)
chr4 (352-405)||(24421257-24421310)
chr4 (359-420)||(24421408-24421469)
chr4 (359-420)||(24470254-24470315)
chr4 (352-405)||(24470413-24470466)
chr4 (359-420)||(24470446-24470507)
chr4 (352-405)||(24470605-24470658)
chr4 (359-420)||(24470638-24470699)
chr4 (367-420)||(24477457-24477510)
chr4 (352-420)||(24420921-24420989)
chr4 (356-420)||(24470782-24470846)
[»] scaffold0879 (5 HSPs)
scaffold0879 (359-420)||(4497-4558)
scaffold0879 (371-420)||(4689-4738)
scaffold0879 (352-402)||(4755-4805)
scaffold0879 (352-405)||(4464-4517)
scaffold0879 (352-420)||(4785-4853)
[»] chr2 (3 HSPs)
chr2 (353-420)||(41899851-41899918)
chr2 (326-362)||(41899998-41900034)
chr2 (384-420)||(41900266-41900302)
[»] chr1 (4 HSPs)
chr1 (345-420)||(52821558-52821633)
chr1 (376-420)||(11879682-11879726)
chr1 (376-420)||(11902374-11902418)
chr1 (352-420)||(11904953-11905021)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 24481143 - 24481335
Alignment:
Q  18 caaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtggggatttgtaaacgtaaggagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481143 caaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtggggatttgtaaacgtaaggagg 24481242  T
Q  118 agatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481243 agatttataaacatagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta 24481335  T

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Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 277 - 420
Target Start/End: Original strand, 24481402 - 24481544
Alignment:
Q  277 tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtataca 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24481402 tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggtgacttgtagacatatggtggtggaggtggcgacttgtataca 24481501  T
Q  377 tatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  24481502 tatggt-ggggtggtgatggagatggtggaggaggagacttgta 24481544  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 396
Target Start/End: Original strand, 24481922 - 24482027
Alignment:
Q  291 gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtatacatatggtgggggtgg 390  Q
    |||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| || || || || |||||||||||||| || || |||||    
T  24481922 gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtacacatatggaggaggtggcggtgacttgtatacatacggaggaggtgg 24482021  T
Q  391 tgatgg 396  Q
    ||||||    
T  24482022 tgatgg 24482027  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 24421216 - 24421277
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||| |||||||| ||||| |||||||| ||||| || |||||||||||||||||||||||    
T  24421216 ggtggtgacttgtaaacataaggtgggggaggtgagggtgatggtggaggaggagacttgta 24421277  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 24476989 - 24477054
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagactt 417  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||||| ||||| || |||||    
T  24476989 tggtggaggtggtgacttgtatacatatggtgggggaggagagggagatggaggaggtggtgactt 24477054  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 414
Target Start/End: Original strand, 24420633 - 24420695
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggaga 414  Q
    |||||| ||||| |||||||| | |||||| || |||||||| ||||||||||||||||||||    
T  24420633 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggaga 24420695  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 24477641 - 24477699
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagactt 417  Q
    ||||| |||||||| |||||||| || |||||||| ||||||||||| |||||||||||    
T  24477641 ggtggggacttgtacacatatggaggaggtggtgagggagatggtggtggaggagactt 24477699  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 24482145 - 24482255
Alignment:
Q  310 gtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggagga 409  Q
    ||||||||| || ||||| || || |||||||| |||||||| || || ||||| || || || ||||| || || |||||||||||||||||||| ||     
T  24482145 gtaaacataaggtggaggaggtggtgacttgtacacatatggaggaggtggtggtgatttatagacataaggaggtggtggtgatggagatggtggtggt 24482244  T
Q  410 ggagacttgta 420  Q
    ||||| |||||    
T  24482245 ggagatttgta 24482255  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 24421036 - 24421085
Alignment:
Q  371 tatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||||||||||||||| || || || |||||||||||||||||||||||    
T  24421036 tatacatatggtgggggaggggagggtgatggtggaggaggagacttgta 24421085  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 24481562 - 24481619
Alignment:
Q  339 tgtagacatatggtggtggaggtggcgacttgtatacatatggtgggggtggtgatgg 396  Q
    |||| ||||||||||| ||||||||||||||||| | |||||| || |||||||||||    
T  24481562 tgtacacatatggtgggggaggtggcgacttgtagatatatggaggaggtggtgatgg 24481619  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 24470802 - 24470734
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||    
T  24470802 tggtgggggtggagatttgtagacatatggtggtggtggagatggggatggtggaggtggtgacttgta 24470734  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 24477394 - 24477454
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggagga 412  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| ||| ||||||||    
T  24477394 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagaaggtagaggagga 24477454  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 24481820 - 24481880
Alignment:
Q  291 gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatgg 351  Q
    |||||||||| ||||| | ||| ||||||||||||||||| || |||||||| ||||||||    
T  24481820 gtggaggaggtggtgacttgtacacatatggaggaggtgggggtgacttgtacacatatgg 24481880  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 24482054 - 24482125
Alignment:
Q  291 gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtg 362  Q
    |||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| ||||| ||||    
T  24482054 gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtatacatatggaggtggcggtg 24482125  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 24420969 - 24421019
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatgg 402  Q
    |||||||||||| |||||||| ||||||||||| || || |||||||||||    
T  24420969 tggtggaggtggtgacttgtagacatatggtggagggggggatggagatgg 24421019  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 24420730 - 24420779
Alignment:
Q  353 ggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatgg 402  Q
    ||||||||||| |||||||| |||||||||||||| || || ||||||||    
T  24420730 ggtggaggtggtgacttgtaaacatatggtgggggaggagagggagatgg 24420779  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 24421257 - 24421310
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtgg 405  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| |||||    
T  24421257 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtgg 24421310  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 24421408 - 24421469
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||| |||||||| ||||| || || |||||||| |||||||||||||| ||||| |||||    
T  24421408 ggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagatttgta 24421469  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 24470315 - 24470254
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||| |||||||| ||||| || || |||||||| |||||||||||||| ||||| |||||    
T  24470315 ggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagatttgta 24470254  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 24470466 - 24470413
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtgg 405  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| |||||    
T  24470466 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtgg 24470413  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 24470507 - 24470446
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||| |||||||| ||||| || ||||| ||||| || | |||||||||||||||||||||    
T  24470507 ggtggtgacttgtaaacatagggcgggggaggtgagggtgttggtggaggaggagacttgta 24470446  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 24470658 - 24470605
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtgg 405  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| |||||    
T  24470658 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtgg 24470605  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 24470699 - 24470638
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||||||||| || | ||| |||||||| || || || |||||||||||||||||||||||    
T  24470699 ggtggcgacttataaatatagggtgggggaggagaaggtgatggtggaggaggagacttgta 24470638  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 24477457 - 24477510
Alignment:
Q  367 cttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||| |||||||||||||| ||||| |||||||| ||||| || ||||||||    
T  24477457 cttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgta 24477510  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 24420921 - 24420989
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||| ||||| || ||||| |||||||| || ||||| ||||| ||||||||||| || ||||||||    
T  24420921 tggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgta 24420989  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 24470846 - 24470782
Alignment:
Q  356 ggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| |||||    
T  24470846 ggaggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgta 24470782  T

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Target: scaffold0879 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 4558 - 4497
Alignment:
Q  359 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||| |||||||| |||||||||||||| ||||| || |||||||||||||||||||||||    
T  4558 ggtggtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggagacttgta 4497  T

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Target: scaffold0879; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 4738 - 4689
Alignment:
Q  371 tatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||||||||||||||| || || || |||||||||||||||||||||||    
T  4738 tatacatatggtgggggaggggagggtgatggtggaggaggagacttgta 4689  T

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Target: scaffold0879; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 402
Target Start/End: Complemental strand, 4805 - 4755
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatgg 402  Q
    |||||||||||| |||||||| ||||||||||| || || |||||||||||    
T  4805 tggtggaggtggtgacttgtagacatatggtggagggggggatggagatgg 4755  T

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Target: scaffold0879; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 4517 - 4464
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtgg 405  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| |||||    
T  4517 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtgg 4464  T

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Target: scaffold0879; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 4853 - 4785
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||| ||||| || ||||| |||||||| || ||||| ||||| ||||||||||| || ||||||||    
T  4853 tggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgta 4785  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 41899851 - 41899918
Alignment:
Q  353 ggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||||||||| |||||||| |||||||| || || ||||| || |||||||| ||||||||||||||    
T  41899851 ggtggaggtggagacttgtaaacatatggaggaggcggtgaaggtgatggtgggggaggagacttgta 41899918  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 41899998 - 41900034
Alignment:
Q  326 ggtggcggcgacttgtagacatatggtggtggaggtg 362  Q
    ||||| || ||||||||||||||||||||||||||||    
T  41899998 ggtggtggggacttgtagacatatggtggtggaggtg 41900034  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 41900266 - 41900302
Alignment:
Q  384 ggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  41900266 ggggtagtgatgcagatggtggaggaggagacttgta 41900302  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 52821558 - 52821633
Alignment:
Q  345 catatggtggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||| ||||| |||||||| |||||||||||||| || || || || ||||| || |||||||| |||||||||||    
T  52821558 catacggtgggggaggtggtgacttgtatacataaggaggtggaggggatggggaaggtggaggtggagacttgta 52821633  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 11879726 - 11879682
Alignment:
Q  376 atatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    ||||||||| || ||||| ||||||||||| ||||||||||||||    
T  11879726 atatggtggtggaggtgagggagatggtggtggaggagacttgta 11879682  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 11902418 - 11902374
Alignment:
Q  376 atatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||| || |||||||| ||||||||||| ||||||||||||||    
T  11902418 atatggaggaggtggtgagggagatggtggtggaggagacttgta 11902374  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 11905021 - 11904953
Alignment:
Q  352 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 420  Q
    |||||||||||| ||||||||    |||||||| ||||| ||||| ||||||||||| || ||||||||    
T  11905021 tggtggaggtggtgacttgtaatagtatggtggtggtggagatggtgatggtggagggggggacttgta 11904953  T

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