View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_low_7 (Length: 414)
Name: NF5726_low_7
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 36702170 - 36702546
Alignment:
| Q |
19 |
aatattcctccaactacctatcgttattattcatcttcctcagtaagttcattcaattcattacttttcatttggtttatttagtttctaataataccaa |
118 |
Q |
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| T |
36702170 |
aatattcctccaactacctatcgttattattcatcttcctcagtaagttcattcaattcattacttttcatttggtttatttagtttctaataataccaa |
36702269 |
T |
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| Q |
119 |
agtggagtccgtaaagcctagctcatctggtaatgccgaaattgttaggttggatgccaaagtgaaaatatttacatgttagctttcttgcttgcttaat |
218 |
Q |
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| T |
36702270 |
agtggagtccgtaaagcctagctcatctggtaatgccgaaattgttaagttggatgccaaagtgaaaatatttacatgttagctttcttgcttgcttaat |
36702369 |
T |
|
| Q |
219 |
tatttctttgcaccatatatagattaattaagtcatcttatagttgtctcttgttaataatctatagcctcgtcgattggatttgaccgtgcaattcttg |
318 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702370 |
tatttctttgcacc--atatagattaattaagtcatcttatagttgtctcttgttaataatctatagcctcgtcgattggatttgaccgtgcaattcttg |
36702467 |
T |
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| Q |
319 |
gacaaacttcctagagttttgtttgatgaggatttacaagcaagggattcactgtaagtttctttttagttatgttcat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702468 |
gacaaacttcctagagttttgtttgatgaggatttacaagcaagggattcactgtaagtttctttttagttatgttcat |
36702546 |
T |
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