View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5726_low_9 (Length: 391)
Name: NF5726_low_9
Description: NF5726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5726_low_9 |
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| [»] scaffold0148 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 46496549 - 46496183
Alignment:
| Q |
13 |
aaaatatatcccaaatttaccatttatggaattaagctttacggaacggcaacaacagatgaaaagaagattcaacacatcacatgcttcaattgaagtt |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46496549 |
aaaatatatcccaaatttaccatttatggaatcaagctttacagaacggcagcaacaaatgaagagaagattcaacacatcacatgcttcaattgaagtt |
46496450 |
T |
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| Q |
113 |
tgtgaagaggtaacgtagatacaacggtccttaaactcattgacaaaaatcaacacaactcaaattcgataaaatcagcacactgttccctcctccttcg |
212 |
Q |
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| T |
46496449 |
tgtaaagaggtaacgtagatacaatggtccttaaactcattgacaaaaatcaacacaactcaaattcgacaaaatcagcacactgttccctcctccttcg |
46496350 |
T |
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| Q |
213 |
agaatcaaattagcaacaacaacagcacaaatgcaa------aatttgagnnnnnnnntcgactccctcatcctgnnnnnnnaaattccaatatgagaaa |
306 |
Q |
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|||||||||||||||||||||||| |||||||| | |||| ||| || |||||||||||||| ||||||||| ||||||| |
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| T |
46496349 |
agaatcaaattagcaacaacaacaacacaaatgtgaaattcgaattcgagaaaaaaaatcaactccctcatcctgtttttttgaattccaatctgagaaa |
46496250 |
T |
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| Q |
307 |
aaagtttcagtttttgagacccaaattcgaaaaaagaaattgaagttgttcttgttgtgttggatct |
373 |
Q |
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| T |
46496249 |
aaagtttgagtttttgagacccaaattcgaaaaaagcaattgaagttgttgttgttgtgttagatct |
46496183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 25609453 - 25609380
Alignment:
| Q |
290 |
aattccaatatgagaaaaaagtttcagtttttgagacccaaattcgaaaaaagaaattgaagttgttcttgttgt |
364 |
Q |
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| T |
25609453 |
aattccaatctgagaaaagagtttgagtttttgagacccaaattcgaaaaaagcaattg-agttgttgttgttgt |
25609380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 13875736 - 13875951
Alignment:
| Q |
13 |
aaaatatatcccaaatttaccatttatggaattaagctttacggaacggcaacaacagatgaaaagaagattcaacacatcacatgcttcaattgaagtt |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13875736 |
aaaatatatcccaaatttaccatttatggaatcaagctttacggaacggcaacaacaaatgaaaagaagattcaacacatcacatgcttcaattgaagtt |
13875835 |
T |
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| Q |
113 |
tgtgaagaggtaacgtagatacaacggtccttaaactcattgacaaaaatcaacacaactcaaattcgataaaatcagcacactgttccctcctccttcg |
212 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13875836 |
tgtaaagaggtaacgtagatacaatggtccttaaactcattgacaaaaatcaacacaactcaaattcgataaaatcagcacactgttccctcctccttcg |
13875935 |
T |
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| Q |
213 |
agaatcaaattagcaa |
228 |
Q |
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| T |
13875936 |
agaatcaaattagcaa |
13875951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 13875978 - 13876084
Alignment:
| Q |
265 |
tcgactccctcatcctgnnnnnnnaaattccaatatgagaaaaaagtttcagtttttgagacccaaattcgaaaaaagaaattgaagttgttcttgttgt |
364 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
13875978 |
tcgactccctcatcctgtttttttaaattccaatatgagaaaaaagtttcagtttttgagacccaaattcaaaaaaagcaattgaagttgttcttgttgt |
13876077 |
T |
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| Q |
365 |
gttggat |
371 |
Q |
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| T |
13876078 |
gttggat |
13876084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 15485 - 15432
Alignment:
| Q |
191 |
cacactgttccctcctccttcgagaatcaaattagcaacaacaacagcacaaat |
244 |
Q |
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|||| |||||||| ||| ||||||||||||| ||||||||||||||||||||| |
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| T |
15485 |
cacattgttccctactcattcgagaatcaaaacagcaacaacaacagcacaaat |
15432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 15375 - 15314
Alignment:
| Q |
304 |
aaaaaagtttcagtttttgagacccaaattcgaaaaa-agaaattgaagttgttcttgttgt |
364 |
Q |
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| T |
15375 |
aaaaaagtttgagtttttgagactcaaatttgaaaaagagcaattcaagttgttgttgttgt |
15314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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