View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5727-Insertion-3 (Length: 856)

Name: NF5727-Insertion-3
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5727-Insertion-3
NF5727-Insertion-3
[»] chr3 (13 HSPs)
chr3 (562-843)||(9359125-9359404)
chr3 (228-524)||(9358748-9359044)
chr3 (237-365)||(47820896-47821026)
chr3 (234-364)||(28934741-28934868)
chr3 (228-364)||(31525363-31525496)
chr3 (235-358)||(28956951-28957074)
chr3 (228-290)||(52076136-52076198)
chr3 (233-288)||(10454357-10454412)
chr3 (234-370)||(20701139-20701275)
chr3 (228-289)||(43073045-43073106)
chr3 (233-290)||(44656229-44656286)
chr3 (304-364)||(53349401-53349460)
chr3 (304-364)||(55166896-55166955)
[»] chr1 (15 HSPs)
chr1 (272-403)||(43268647-43268778)
chr1 (228-375)||(19472786-19472933)
chr1 (235-524)||(43460533-43460831)
chr1 (228-364)||(12172954-12173087)
chr1 (731-828)||(2308252-2308349)
chr1 (236-373)||(8462976-8463113)
chr1 (228-364)||(26990601-26990734)
chr1 (228-288)||(38548750-38548810)
chr1 (237-364)||(42442015-42442142)
chr1 (228-278)||(28447802-28447852)
chr1 (304-357)||(47028937-47028990)
chr1 (228-287)||(31833965-31834024)
chr1 (242-289)||(46757378-46757425)
chr1 (236-289)||(26385035-26385087)
chr1 (304-365)||(41955963-41956024)
[»] chr8 (15 HSPs)
chr8 (300-412)||(30836208-30836320)
chr8 (8-119)||(31944022-31944132)
chr8 (142-211)||(31943953-31944022)
chr8 (720-843)||(32915190-32915313)
chr8 (228-364)||(22839250-22839387)
chr8 (234-358)||(38086419-38086544)
chr8 (233-289)||(40930834-40930890)
chr8 (233-357)||(5200486-5200609)
chr8 (233-364)||(24200626-24200753)
chr8 (237-289)||(25829272-25829324)
chr8 (233-289)||(13959223-13959279)
chr8 (299-364)||(10124859-10124925)
chr8 (228-270)||(30836127-30836169)
chr8 (233-281)||(584139-584187)
chr8 (233-263)||(7845138-7845168)
[»] chr4 (8 HSPs)
chr4 (234-504)||(16662312-16662584)
chr4 (233-358)||(32183282-32183409)
chr4 (233-358)||(16572074-16572198)
chr4 (228-370)||(25641268-25641413)
chr4 (228-289)||(15186980-15187041)
chr4 (228-287)||(47571570-47571629)
chr4 (732-766)||(26209499-26209533)
chr4 (234-268)||(45511407-45511441)
[»] chr7 (14 HSPs)
chr7 (233-364)||(30655602-30655734)
chr7 (228-364)||(46691844-46691981)
chr7 (238-375)||(49035862-49036001)
chr7 (233-358)||(31424776-31424902)
chr7 (235-357)||(41702870-41702992)
chr7 (233-289)||(1039067-1039123)
chr7 (237-363)||(33320704-33320825)
chr7 (234-289)||(36615808-36615863)
chr7 (712-807)||(43805529-43805624)
chr7 (233-290)||(42598057-42598114)
chr7 (237-283)||(32679023-32679069)
chr7 (236-289)||(19471096-19471149)
chr7 (236-289)||(22197744-22197797)
chr7 (236-289)||(22240024-22240077)
[»] chr5 (10 HSPs)
chr5 (237-375)||(23172981-23173118)
chr5 (236-364)||(10431056-10431185)
chr5 (235-288)||(22887284-22887337)
chr5 (234-364)||(819134-819261)
chr5 (228-279)||(9597753-9597804)
chr5 (237-288)||(9931804-9931855)
chr5 (303-364)||(2292161-2292223)
chr5 (305-370)||(9931877-9931941)
chr5 (235-287)||(25539896-25539947)
chr5 (234-289)||(3677795-3677849)
[»] chr2 (6 HSPs)
chr2 (233-365)||(41419616-41419748)
chr2 (232-365)||(14732343-14732474)
chr2 (304-364)||(41378272-41378332)
chr2 (233-358)||(22649069-22649194)
chr2 (233-287)||(38908743-38908797)
chr2 (242-289)||(41378216-41378263)
[»] chr6 (9 HSPs)
chr6 (228-358)||(15859100-15859234)
chr6 (236-364)||(10246910-10247035)
chr6 (233-364)||(11546765-11546895)
chr6 (237-364)||(34761160-34761287)
chr6 (228-289)||(6575797-6575858)
chr6 (304-370)||(33984747-33984813)
chr6 (236-290)||(33984833-33984887)
chr6 (228-281)||(33112714-33112767)
chr6 (233-279)||(14459932-14459978)
[»] scaffold0001 (1 HSPs)
scaffold0001 (734-808)||(520028-520102)
[»] scaffold0209 (1 HSPs)
scaffold0209 (233-281)||(12899-12947)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 562 - 843
Target Start/End: Original strand, 9359125 - 9359404
Alignment:
Q  562 aaggcagcagaaccaacactccaaacagcccaggcgcactacagctgtgaacagcaactagcagaacttccagcagctataagaaccagcaggcatgcag 661  Q
    |||||||| ||||||| |||||||| | |  |||||||||||| | ||||| ||||||||||||||||| |||||||||||| |||||||||||| ||||    
T  9359125 aaggcagccgaaccaaaactccaaaaaact-aggcgcactacaaccgtgaa-agcaactagcagaactttcagcagctataataaccagcaggcacgcag 9359222  T
Q  662 acacagagtacagaccaccaaaaagcaaacagcaacataaaacagctccaaaaccaattacttccttaatagacattcttgtggattccaattccattca 761  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9359223 acacagaggacagaccaccaaaaagcaaacagcaacaaaaaacagctccaaaaccaattacttccttaatagacattcttgtggattccaattccattca 9359322  T
Q  762 taatataagcatgattgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccgacaagagatcatcca 843  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  9359323 taatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaacaatctccgacaaaagatcatcca 9359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 228 - 524
Target Start/End: Original strand, 9358748 - 9359044
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 327  Q
    |||| ||||||||||||||| |||||||||||||||||||||  |||||||||| ||||||||        || ||||||||||||||||||||||||||    
T  9358748 gaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaa-catagaaggggaaatcggttgccgcacaa 9358846  T
Q  328 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgtaaacaccaggaaagcacccaaaacnnnn 427  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        
T  9358847 acaccggctcgaacaaaaacccctttaaaaaccacccacaaaccaagatgccgcctataaacgtaacaccgtaaacaccaggaaagcacccaaaaccaaa 9358946  T
Q  428 nnnggca-caagcgatgaggctgaagtatactatcaaggagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 524  Q
       |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  9358947 aaaggcaccaagcaatgaggctgaagtatactatcaagaagctagcatactcctacctcacaaccagccgagccaaaaccactaaaacagcaggtccc 9359044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 47821026 - 47820896
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgcacaaacaccga 334  Q
    ||||||||||||||||||||||||||| ||| || |||||||||||||||||||          |||||||||||||||||||||||||||||||||||     
T  47821026 aaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccgg 47820927  T
Q  335 ctccaacaaaaacccctttaaaaaccaccca 365  Q
    ||| |||||||||||||||||||||||||||    
T  47820926 ctcgaacaaaaacccctttaaaaaccaccca 47820896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 28934741 - 28934868
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 333  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||         ||| |||||||||||||||||  |||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaaca-aaacaaggggaaatcggttgc--cacaaacaccg 28934837  T
Q  334 actccaacaaaaacccctttaaaaaccaccc 364  Q
     ||| |||||||||||||| |||||||||||    
T  28934838 gctcgaacaaaaaccccttaaaaaaccaccc 28934868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 31525496 - 31525363
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 327  Q
    |||| |||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  31525496 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 31525399  T
Q  328 acaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    ||| || ||| |||||||||||| |||||||||||||    
T  31525398 acaacggctcgaacaaaaacccc-ttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 235 - 358
Target Start/End: Complemental strand, 28957074 - 28956951
Alignment:
Q  235 caaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 334  Q
    |||||||||||||||||||||| |||||| |||| | || |||||||||||||           ||||||||||||||||||||||| |||||||||||     
T  28957074 caaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaacaccgg 28956975  T
Q  335 ctccaacaaaaacccctttaaaaa 358  Q
    ||| ||||||||||||||||||||    
T  28956974 ctcgaacaaaaacccctttaaaaa 28956951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 52076198 - 52076136
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag 290  Q
    |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  52076198 gaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggag 52076136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 10454412 - 10454357
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgg 288  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  10454412 ggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgg 10454357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 234 - 370
Target Start/End: Complemental strand, 20701275 - 20701139
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 332  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||         |||| |||||||||||| ||||| ||| |||  |    
T  20701275 gcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcgattgccacac-aactac 20701177  T
Q  333 gactccaacaaaaacccctttaaaaaccacccacaaac 370  Q
    | ||| |||||||||||||| |||||||||||| ||||    
T  20701176 ggctcgaacaaaaaccccttaaaaaaccacccaaaaac 20701139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 43073045 - 43073106
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||    
T  43073045 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 43073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 44656229 - 44656286
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag 290  Q
    ||||||||||||||||||||||||||||||| ||| || | |||||||||||||||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggag 44656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 53349460 - 53349401
Alignment:
Q  304 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  53349460 aagggaaaatcggttgccgcacaaacaccggctcaaacaaaaacccc-ttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 55166896 - 55166955
Alignment:
Q  304 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    ||||||||||||||||||||||||||   | ||| |||||||||||| |||||||||||||    
T  55166896 aaggggaaatcggttgccgcacaaactttggctcgaacaaaaacccc-ttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 272 - 403
Target Start/End: Original strand, 43268647 - 43268778
Alignment:
Q  272 ctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaacc 371  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||     
T  43268647 ctaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccacccacaaaca 43268746  T
Q  372 aaggtgccgcctataaacgtaacactgtaaac 403  Q
    ||||||||| ||||||||||||||||||||||    
T  43268747 aaggtgccgtctataaacgtaacactgtaaac 43268778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 228 - 375
Target Start/End: Complemental strand, 19472933 - 19472786
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 327  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||        |||||||||||||||| ||||||  ||||    
T  19472933 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcagttgccatacaa 19472834  T
Q  328 acaccgactccaacaaaaacccctttaaaaaccacccacaaaccaagg 375  Q
    || ||| ||| |||||||| |||||||||||||||||| |||| ||||    
T  19472833 actccggctcgaacaaaaatccctttaaaaaccacccataaactaagg 19472786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 235 - 524
Target Start/End: Complemental strand, 43460831 - 43460533
Alignment:
Q  235 caaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtg----gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaa-c 329  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||  ||||    ||         | ||||||||||||||||||||   ||||| |    
T  43460831 caaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaatcggttgcgatacaaaac 43460732  T
Q  330 accgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcct-ataaacgta--acactgtaaacaccaggaaagcacccaaaacnnn 426  Q
    || ||||| |||||||||||||| ||||||||||  ||||| |||||||||||| | |||||||  ||||   ||||||||||||||||||||||||       
T  43460731 actgactcgaacaaaaaccccttcaaaaaccaccttcaaacaaaggtgccgcctaaaaaacgtaacacacaaaaaacaccaggaaagcacccaaaaccaa 43460632  T
Q  427 nnnnggca-caagcgatgaggctgaagtatactatcaaggagctagcatactcctacctcacaaccatccgagccaaaaccaataaaacagcaggtccc 524  Q
        | || ||||| |||||||||||||||||||||| | |  ||||||||||| ||||||| |||| ||||||||||| |  || |||||||||||||    
T  43460631 acgagacaccaagcaatgaggctgaagtatactatcatgaaagtagcatactcccacctcactaccagccgagccaaaagccctacaacagcaggtccc 43460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 12173087 - 12172954
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 327  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||         |||| |||||||||||||||||| |||||    
T  12173087 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacaaacaaggggaaatcggttgccacacaa 12172990  T
Q  328 acaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    ||| |  ||| |||||||||||| |||||||||||||    
T  12172989 acatcagctcgaacaaaaacccc-ttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 731 - 828
Target Start/End: Complemental strand, 2308349 - 2308252
Alignment:
Q  731 tagacattcttgtggattccaattccattcataatataagcatgattgcatatcaagcctagacaaactccaccgccttgaattaacaacaatctccg 828  Q
    |||||||||||| |||||||||||||||||||||||||  || | |||||||| ||| |||||||||||||||| || |||||| || ||||||||||    
T  2308349 tagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttaccacaatctccg 2308252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 236 - 373
Target Start/End: Original strand, 8462976 - 8463113
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 335  Q
    |||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||        || | ||||| |||||||||||| || ||||  || |    
T  8462976 aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcggttgccacaaaaacgtcggc 8463075  T
Q  336 tccaacaaaaacccctttaaaaaccacccacaaaccaa 373  Q
    || |||||||||||||| |||||||||||| |||||||    
T  8463076 tcgaacaaaaaccccttaaaaaaccacccaaaaaccaa 8463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 26990734 - 26990601
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaa 327  Q
    |||| |||||||||||||||||||| |||||||||| |||||| |||||||||| |||||||         || | ||||| |||||| |||||||||||    
T  26990734 gaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaagggaaaatcgattgccgcacaa 26990637  T
Q  328 acaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
     ||||| ||| |||||||| ||| |||||||||||||    
T  26990636 gcaccggctcaaacaaaaatccc-ttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 38548810 - 38548750
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgg 288  Q
    |||| ||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||    
T  38548810 gaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgg 38548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 42442015 - 42442142
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtg-gagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 335  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||||||||  |         |||| || |||||||||||||||    ||||||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgac 42442114  T
Q  336 tccaacaaaaacccctttaaaaaccaccc 364  Q
    || |||||||||||| |||||||||||||    
T  42442115 tcgaacaaaaacccc-ttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 28447852 - 28447802
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataa 278  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||||    
T  28447852 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataa 28447802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 47028990 - 47028937
Alignment:
Q  304 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaa 357  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||    
T  47028990 aaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaa 47028937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 31834024 - 31833965
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtg 287  Q
    |||| |||||||||||||||||||||||  |||||| ||| || |||| |||||||||||    
T  31834024 gaattggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtg 31833965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 46757425 - 46757378
Alignment:
Q  242 ttattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||||||||||||||||||||| ||| || ||||||||||| ||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtgga 46757378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 26385087 - 26385035
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||||| |||||||||| | |||||| |||||||||| |||||||    
T  26385087 aaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtgga 26385035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 41955963 - 41956024
Alignment:
Q  304 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccca 365  Q
    ||||||||||||||||||  |  ||||||| ||| |||||||| ||||| ||||||||||||    
T  41955963 aaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccaccca 41956024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 300 - 412
Target Start/End: Original strand, 30836208 - 30836320
Alignment:
Q  300 aaagaaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctataaacgtaacactgt 399  Q
    |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  30836208 aaagaaggggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccacccacaaacaaaggtgccgcctataaacgtaacaccgt 30836307  T
Q  400 aaacaccaggaaa 412  Q
    |||||||||||||    
T  30836308 aaacaccaggaaa 30836320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 31944132 - 31944022
Alignment:
Q  8 aaagggagcgcatacatggaatatagcaacctctaatcaatatattatcatcggttggaaaatttattgtgtaacatccttcaccattgctatgaaacct 107  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  31944132 aaagggagcacataaatggaatatagcaacctctaatcaatatattatcatcggttgg-caatttattgtgtaacatccttcacaattgctatgaaacct 31944034  T
Q  108 ttaattttggaa 119  Q
    ||||||||||||    
T  31944033 ttaattttggaa 31944022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 31944022 - 31943953
Alignment:
Q  142 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacagtgggagaatcaatgtattgttatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31944022 actgatagtcatgttgaaacttgtatcattttctaaaagtgaacaatgggagaatcaatgtattgttatt 31943953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 720 - 843
Target Start/End: Original strand, 32915190 - 32915313
Alignment:
Q  720 tacttccttaatagacattcttgtggattccaattccattcataatataagcatgattgcatatcaagcctagacaaactccaccgccttgaattaacaa 819  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||| ||| ||||  |||||| ||||||||||||||| ||||||||| |    
T  32915190 tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactccaccgccatgaattaacca 32915289  T
Q  820 caatctccgacaagagatcatcca 843  Q
    |||| |||| ||| ||||||||||    
T  32915290 caatttccgccaaaagatcatcca 32915313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 22839387 - 22839250
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgca-ca 326  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||||||| |||| |||||        |||||||| ||||||||||||||  |  |    
T  22839387 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccatataa 22839288  T
Q  327 aacaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    |||| || ||| |||||||| |||||||||||||||||    
T  22839287 aacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 234 - 358
Target Start/End: Original strand, 38086419 - 38086544
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag-nnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 332  Q
    ||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||         |||||||||| ||||||||||||  |||||| |     
T  38086419 gcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcggttgccatacaaactct 38086518  T
Q  333 gactccaacaaaaacccctttaaaaa 358  Q
    | ||| ||||||||||||||||||||    
T  38086519 ggctcgaacaaaaacccctttaaaaa 38086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 40930834 - 40930890
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 40930890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 233 - 357
Target Start/End: Original strand, 5200486 - 5200609
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 332  Q
    |||||||||||||||||||||||| |||||| |||| | |||||||| | ||||||||        || | ||||| |||||||||||||||||||||||    
T  5200486 ggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaa-catacaagggaaaatcggttgccgcacaaacacc 5200584  T
Q  333 gactccaacaaaaacccctttaaaa 357  Q
    | ||| |||||||||||||| ||||    
T  5200585 ggctcgaacaaaaaccccttaaaaa 5200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 364
Target Start/End: Original strand, 24200626 - 24200753
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 332  Q
    |||||||||||||||| ||||||| |||||| |||||| |||||||||| |||||||         || | ||||||||||||||||||||| |||||||    
T  24200626 ggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtgga--aaaaaaacatacaaggggaaatcggttgccgcaaaaacacc 24200723  T
Q  333 gactccaacaaaaacccctttaaaaaccaccc 364  Q
    | ||| ||||||||| |  |||||||||||||    
T  24200724 ggctcgaacaaaaacac--ttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 25829272 - 25829324
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  25829272 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtgga 25829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 13959223 - 13959279
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||    
T  13959223 ggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtgga 13959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 10124925 - 10124859
Alignment:
Q  299 caaagaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    |||| ||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  10124925 caaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 10124859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 30836127 - 30836169
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagc 270  Q
    |||| ||||||||||||||||||||||||| ||||||||||||    
T  30836127 gaatcggcaaaatattattaaccaacaagctcgtgcgagaagc 30836169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 584139 - 584187
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagct 281  Q
    ||||||||||||||| ||||||||||||| | |||||| ||||||||||    
T  584139 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 7845168 - 7845138
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgc 263  Q
    |||||||||||||||||||||||||||||||    
T  7845168 ggcaaaatattattaaccaacaagcccgtgc 7845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 234 - 504
Target Start/End: Original strand, 16662312 - 16662584
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacacc 332  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||         | |||||||| ||||| ||||||  || ||||||     
T  16662312 gcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtgga---aaaaaactaagaagggaaaatctgttgccatacaaaacact 16662408  T
Q  333 gactccaacaaaaacccctttaaaaaccacccacaaaccaaggtgccgcctat-aaacgtaa--cactgtaaacaccaggaaagcacccaaaacnnnnnn 429  Q
    | |||  ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||  |||   |||||||| |||| ||||||||||          
T  16662409 ggctcgtacaaaaacccctttaaaaaccaccctcaaacaaaggtgccgcctataaaacgtaaagcacaaaaaacaccatgaaaacacccaaaaccaaacg 16662508  T
Q  430 nggca-caagcgatgaggctgaagtatactatcaaggagctagcatactcctacctcacaaccatccgagccaaaa 504  Q
     |||| ||||| ||||||||||||||||  |||| | |  ||||||||||| ||||||| |||| |||||||||||    
T  16662509 aggcaccaagcaatgaggctgaagtatatcatcatgaaagtagcatactccgacctcactaccagccgagccaaaa 16662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 32183409 - 32183282
Alignment:
Q  233 ggcaaaatattattaaccaa-caagcccgtgcgagaagccctaataagctcgggtgga-gnnnnnnnncaaagaaggggaaatcggttgccgcacaaaca 330  Q
    |||||||||||||||||||| ||||||||||| ||  || |||||||||||||||||| |        |||||||||||||||||||||||  |||||||    
T  32183409 ggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatcggttgccatacaaaca 32183310  T
Q  331 ccgactccaacaaaaacccctttaaaaa 358  Q
    ||| ||| ||||||||||||||||||||    
T  32183309 ccggctcgaacaaaaacccctttaaaaa 32183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 332  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||          | | ||||||||||||||||||||| |||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  333 gactccaacaaaaacccctttaaaaa 358  Q
    |  || ||| ||||||||||||||||    
T  16572098 ggttcgaac-aaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 25641268 - 25641413
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 325  Q
    |||| |||||||| |||||||||||||||||||||| |||||| |||| ||||| ||||||||          ||||||||||||||| |||||||  ||    
T  25641268 gaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgccatac 25641367  T
Q  326 aaacaccgactccaacaaaaaccccttt-aaaaaccacccacaaac 370  Q
     |||| || ||| ||||||||||| ||| |||||||||||| ||||    
T  25641368 taacatcggctcgaacaaaaacccttttaaaaaaccacccataaac 25641413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 15186980 - 15187041
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||    
T  15186980 gaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 47571570 - 47571629
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtg 287  Q
    |||| ||||||||||||||||||||||| ||||||  || ||| ||||||||||||||||    
T  47571570 gaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtg 47571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 732 - 766
Target Start/End: Complemental strand, 26209533 - 26209499
Alignment:
Q  732 agacattcttgtggattccaattccattcataata 766  Q
    ||||||||||||||||||||| |||||||||||||    
T  26209533 agacattcttgtggattccaactccattcataata 26209499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 45511407 - 45511441
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaa 268  Q
    |||||||||||||||||||||||||||||| ||||    
T  45511407 gcaaaatattattaaccaacaagcccgtgcaagaa 45511441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 364
Target Start/End: Original strand, 30655602 - 30655734
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 331  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||         |||| |||||||||||||||||| ||| ||| |     
T  30655602 ggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcggttgccacacaaaatat 30655701  T
Q  332 cgactccaacaaaaacccctttaaaaaccaccc 364  Q
    |||||| |||||||||| ||| |||||||||||    
T  30655702 cgactcgaacaaaaacctcttaaaaaaccaccc 30655734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 228 - 364
Target Start/End: Original strand, 46691844 - 46691981
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag--nnnnnnnncaaagaaggggaaatcggttgccgcac 325  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||          || | |||||||||||||||||| ||     
T  46691844 gaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgccacat 46691943  T
Q  326 aaacaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    |||||||| ||| |||||||||||| |||||||||||||    
T  46691944 aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 238 - 375
Target Start/End: Original strand, 49035862 - 49036001
Alignment:
Q  238 aatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgcacaaacaccgac 335  Q
    ||||||||||||||||||| |||| | |||||| |||||||||||||||||||          |||| |||||||||||||||||| || ||||||||      
T  49035862 aatattattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggt 49035961  T
Q  336 tccaacaaaaacccctttaaaaaccacccacaaaccaagg 375  Q
    || |||||||||||||| |||||||||||| |||| ||||    
T  49035962 tcgaacaaaaaccccttaaaaaaccacccataaacaaagg 49036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 31424776 - 31424902
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcac-aaacac 331  Q
    ||||||||||||||||||||||| ||||||| |||| | |||||||||| ||||||||        |||||||||||||||||||||||   | ||||||    
T  31424776 ggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggttgccattcgaaacac 31424875  T
Q  332 cgactccaacaaaaacccctttaaaaa 358  Q
    || ||| | ||||||||||||||||||    
T  31424876 cggctcgatcaaaaacccctttaaaaa 31424902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 41702992 - 41702870
Alignment:
Q  235 caaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccga 334  Q
    ||||||||||| ||||||| ||||||||| || ||| |||||||| | ||||||||        || | |||||||| |||||||||||||||||||||     
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  335 ctccaacaaaaacccctttaaaa 357  Q
    ||| |||||||||||||| ||||    
T  41702892 ctcgaacaaaaaccccttaaaaa 41702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 1039067 - 1039123
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  1039067 ggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtgga 1039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 363
Target Start/End: Complemental strand, 33320825 - 33320704
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 336  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||||||           ||| |||||||||| |||||||  |||||||||| ||    
T  33320825 aaatattgttaaccaacaagcccgtgcaagaagcactaataagctcgggtgg-----gaaaaaaaacaaggggaaattggttgccttacaaacaccggct 33320731  T
Q  337 ccaacaaaaacccctttaaaaaccacc 363  Q
    | ||||||| |||||| ||||||||||    
T  33320730 cgaacaaaacccccttaaaaaaccacc 33320704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 36615808 - 36615863
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtgga 36615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 712 - 807
Target Start/End: Complemental strand, 43805624 - 43805529
Alignment:
Q  712 aaaccaattacttccttaatagacattcttgtggattccaattccattcataatataagcatgattgcatatcaagcctagacaaactccaccgcc 807  Q
    ||||||| |||||||| || || || ||||| ||||||||| | |||||||||||||| || | |||||||| ||||||| |||||||||||||||    
T  43805624 aaaccaactacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgcc 43805529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 42598114 - 42598057
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag 290  Q
    ||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||    
T  42598114 ggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggag 42598057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 32679069 - 32679023
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcg 283  Q
    |||| |||||||||||||||||||||| ||| || ||||||||||||    
T  32679069 aaattttattaaccaacaagcccgtgcaagacgcactaataagctcg 32679023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 19471096 - 19471149
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||| ||||||||| |||| ||  || ||||||||||||||||||    
T  19471096 aaaatattattaagcaacaagccggtgcaaggtgcactaataagctcgggtgga 19471149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 22197797 - 22197744
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||||||||||| |||||| ||  || |||| |||||||||||||    
T  22197797 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 22240024 - 22240077
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    ||||||||||||||||||||| |||||| ||  || |||| |||||||||||||    
T  22240024 aaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtgga 22240077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 23172981 - 23173118
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 336  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||         |||| |||| |||||| ||||||  | |||||||| ||    
T  23172981 aaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggct 23173080  T
Q  337 ccaacaaaaacccctttaaaaaccacccacaaaccaagg 375  Q
    | ||| |||||||| |||||||||||||| |||| ||||    
T  23173081 cgaac-aaaacccccttaaaaaccacccataaacaaagg 23173118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 236 - 364
Target Start/End: Complemental strand, 10431185 - 10431056
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnn-caaagaaggggaaatcggttgccgcacaaacaccga 334  Q
    ||||||||||||| |||||| ||||||| ||||||  ||||||| ||||||||||         |||| |||| ||||||||||||| ||||||||||||    
T  10431185 aaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcggttgccacacaaacaccga 10431086  T
Q  335 ctccaacaaaaacccctttaaaaaccaccc 364  Q
    ||| |||||||||| | | |||||||||||    
T  10431085 ctcgaacaaaaacctcataaaaaaccaccc 10431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 22887337 - 22887284
Alignment:
Q  235 caaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgg 288  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgg 22887284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 234 - 364
Target Start/End: Original strand, 819134 - 819261
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccg 333  Q
    |||||||||||||| |||| ||| |||||  |||||| |||||||| |||||||||          ||| || |||||||||||||||  |||||||||     
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaata-aaacaaagggaaatcggttgcc--acaaacacca 819230  T
Q  334 actccaacaaaaacccctttaaaaaccaccc 364  Q
    |||| |||||||||||||| |||||||||||    
T  819231 actcgaacaaaaaccccttaaaaaaccaccc 819261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 9597753 - 9597804
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataag 279  Q
    |||| |||||||||||||||||||||||||| |||| |||||| ||||||||    
T  9597753 gaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataag 9597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 9931804 - 9931855
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgg 288  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgg 9931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 2292223 - 2292161
Alignment:
Q  303 gaaggggaaatcggttgccgcacaaa-caccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    |||||||||||||||||||  ||||| ||||| ||| |||||||||||||| |||||||||||    
T  2292223 gaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaaaccaccc 2292161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 9931877 - 9931941
Alignment:
Q  305 aggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 370  Q
    ||||||||||||||||||||||||||||  ||| ||||||||| || | |||||||||||| ||||    
T  9931877 aggggaaatcggttgccgcacaaacaccagctcgaacaaaaacacc-tcaaaaaccacccaaaaac 9931941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 25539947 - 25539896
Alignment:
Q  235 caaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtg 287  Q
    ||||||||||||| ||||||||||||||| ||||||  |||||||||||||||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtg 25539896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 3677795 - 3677849
Alignment:
Q  234 gcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||| ||||||||| ||||||||||| ||||||| || ||||||||||||||||||    
T  3677795 gcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtgga 3677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 41419748 - 41419616
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaa-agaaggggaaatcggttgccgcacaaacac 331  Q
    ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||          || | ||||||||||||||||||  |  |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  332 cgactccaacaaaaacccctttaaaaaccaccca 365  Q
    |||||| |||||||||||| ||||||||||||||    
T  41419648 cgactcgaacaaaaacccc-ttaaaaaccaccca 41419616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 232 - 365
Target Start/End: Original strand, 14732343 - 14732474
Alignment:
Q  232 aggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacac 331  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |         | | ||||||||||||||| ||||| ||| ||    
T  14732343 aggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgg-gaaaaaaataatacaaggggaaatcggttaccgcaaaaatac 14732441  T
Q  332 cgactccaacaaaaacccctttaaaaaccaccca 365  Q
    |  ||| |||||||||||| ||||||||||||||    
T  14732442 cagctcgaacaaaaacccc-ttaaaaaccaccca 14732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 41378272 - 41378332
Alignment:
Q  304 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccaccc 364  Q
    |||||||||||||||||| ||||||| ||| ||| || |||||||||||||||||||||||    
T  41378272 aaggggaaatcggttgccacacaaactccggctcgaataaaaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 22649069 - 22649194
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgcc-gcacaaacac 331  Q
    |||||||| |||||||||||||||||||||| |||||  |||||||||| |||| |||        |||||||||||||||||||||||    |||||||    
T  22649069 ggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagag-aaaaaaacaaagaaggggaaatcggttgccattccaaacac 22649167  T
Q  332 cgactccaacaaaaacccctttaaaaa 358  Q
    || ||  | ||||||||||||||||||    
T  22649168 cggcttgatcaaaaacccctttaaaaa 22649194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 38908797 - 38908743
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtg 287  Q
    |||||||||||||||||||| ||| |||||| ||| || ||||||||||||||||    
T  38908797 ggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtg 38908743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 41378216 - 41378263
Alignment:
Q  242 ttattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||||||||||||||||||||  ||| || ||||||||||||||||||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtgga 41378263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 358
Target Start/End: Complemental strand, 15859234 - 15859100
Alignment:
Q  228 gaataggcaaaatattattaaccaa--caagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnn--caaagaaggggaaatcggttgccgc 323  Q
    |||| |||||||||||||||| |||  ||||||||||| ||  || |||||||||||||||||||          |||||||||||||||||||||||      
T  15859234 gaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaatcggttgccaa 15859135  T
Q  324 acaaacaccgactccaacaaaaacccctttaaaaa 358  Q
    |||||||||| ||| ||||||||||||||||||||    
T  15859134 acaaacaccggctcgaacaaaaacccctttaaaaa 15859100  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 236 - 364
Target Start/End: Complemental strand, 10247035 - 10246910
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgac 335  Q
    |||||||||||||||||||||||||||| |||||| |||| | | || |||||||        |||||||||| |||||||||| | ||||| ||||| |    
T  10247035 aaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaa--caaagaagggaaaatcggttgtcacacaa-caccggc 10246939  T
Q  336 tccaacaaaaacccctttaaaaaccaccc 364  Q
    || ||||||||||||||||||||||||||    
T  10246938 tcgaacaaaaacccctttaaaaaccaccc 10246910  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 364
Target Start/End: Complemental strand, 11546895 - 11546765
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacacc 332  Q
    |||||||||||||||||  |||||||||||| || ||| ||||||||||||||| |||        ||||||||| ||||||||||| |  |||||||||    
T  11546895 ggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggt-gagaaaaaaaacaaagaaggagaaatcggttgtcatacaaacacc 11546797  T
Q  333 gactccaacaaaaacccctttaaaaaccaccc 364  Q
    | ||| ||||||||| |||| |||||| ||||    
T  11546796 ggctcgaacaaaaactccttaaaaaactaccc 11546765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 34761287 - 34761160
Alignment:
Q  237 aaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggagnnnnnnnncaaagaaggggaaatcggttgccgcacaaacaccgact 336  Q
    |||||||||||| | |||||||||||| || ||| |||||||||||||||||          ||||||||  ||||||||||| |  |||||||||||||    
T  34761287 aaatattattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcggttgtcatacaaacaccgact 34761188  T
Q  337 ccaacaaaaacccctttaaaaaccaccc 364  Q
    | ||||||||| |||| |||||||||||    
T  34761187 cgaacaaaaactccttaaaaaaccaccc 34761160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 6575858 - 6575797
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtgga 289  Q
    |||| |||||||||||||||| |||||||||||||| |||||| |||||||| |||||||||    
T  6575858 gaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtgga 6575797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 33984813 - 33984747
Alignment:
Q  304 aaggggaaatcggttgccgcacaaacaccgactccaacaaaaacccctttaaaaaccacccacaaac 370  Q
    ||||||||||||||||||  |||||||| |  || |||||||||||||| |||||||||||| ||||    
T  33984813 aaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccacccataaac 33984747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 33984887 - 33984833
Alignment:
Q  236 aaaatattattaaccaacaagcccgtgcgagaagccctaataagctcgggtggag 290  Q
    |||||||||||| |||||||||||||  ||| ||| |||||||||||||||||||    
T  33984887 aaaatattattagccaacaagcccgtatgaggagcactaataagctcgggtggag 33984833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 33112714 - 33112767
Alignment:
Q  228 gaataggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagct 281  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||| |||||    
T  33112714 gaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagct 33112767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 14459978 - 14459932
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataag 279  Q
    ||||||||||||||| ||||| |||||||||||| ||| ||||||||    
T  14459978 ggcaaaatattattagccaacgagcccgtgcgaggagcactaataag 14459932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 734 - 808
Target Start/End: Original strand, 520028 - 520102
Alignment:
Q  734 acattcttgtggattccaattccattcataatataagcatgattgcatatcaagcctagacaaactccaccgcct 808  Q
    ||||||||| |||||||||||||||||||| ||||  || | ||||||| ||||||||| ||||| |||||||||    
T  520028 acattcttgaggattccaattccattcatagtatagacaagtttgcataacaagcctagtcaaacaccaccgcct 520102  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 12899 - 12947
Alignment:
Q  233 ggcaaaatattattaaccaacaagcccgtgcgagaagccctaataagct 281  Q
    ||||||||||||||| ||||||||||||| | |||||| ||||||||||    
T  12899 ggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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