View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727-Insertion-4 (Length: 646)
Name: NF5727-Insertion-4
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 365 - 644
Target Start/End: Original strand, 13192665 - 13192943
Alignment:
| Q |
365 |
cttcttcatataagtattattatttttgacttatctcattgannnnnnnnnnnnnnaaggagacttatctcattgatgaaactagaaaattatctaccaa |
464 |
Q |
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| T |
13192665 |
cttcttcatataagtattattatttttgacttatctcattgatttttttttttg--aaggagacttatctcattgatgaaactagaaaattatctaccaa |
13192762 |
T |
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| Q |
465 |
aaataaagtactccattattagaaaa-aataatctttgttttgatgaagtaagcattaattttctttgacaaaaatgaagtaagcattcataaaagtagc |
563 |
Q |
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| T |
13192763 |
aaataaagtactccattattagaaaaaaataatctttcttttgatgaagtaagcattgattttctttgacaaaaatgaagtaagcattcataaaagtagc |
13192862 |
T |
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| Q |
564 |
actatttgtctttgttctgaactgaactgtacttcaactcaagtacacaaactgaagtagtaacaaaaaaccatgatgttt |
644 |
Q |
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| T |
13192863 |
actatttgtctttgttctgaactgaactgtacttcaactcaagtacacaaactgaagtagtaacaaaaaaccatgatgttt |
13192943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 13192224 - 13192572
Alignment:
| Q |
8 |
tgtctaacttatcttcatttgattatatcattagagattgtatgctttattgaattgtgtattaatttgttggttgagtttattaagagacaaattaata |
107 |
Q |
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| T |
13192224 |
tgtctaacttatcttcatttgattatatcattagagattgtatgctttattgaattgtgtactaatttgttggttgagtttattaaaagacaaactaata |
13192323 |
T |
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| Q |
108 |
tggtagtttattaactagttaaggtcgctgtattagattaa--tannnnnnnnagtaataatttgatgtcttcttgtattgctttatattcgattagttt |
205 |
Q |
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| T |
13192324 |
tggtagtttattaactagttaagatcaccattttagattaatgttttttttttaataatgatttgatgtcttcttgcattgctttatattcgattagttt |
13192423 |
T |
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| Q |
206 |
tcttttttaaaaaggctaaattacttattcaa---tgttatgagataattttaaaacatgactcacaacaaaattattannnnnnnnnnnagaagatcaa |
302 |
Q |
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| T |
13192424 |
tcttttttgaaaaggctaaattacttatttaatgttgttatgagataattttaaaacataactcacaacaaaattattattattttttgtagaagatcaa |
13192523 |
T |
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| Q |
303 |
tgtaatta-ttttccct--aaaagaaaaatcaatataattatttttgac |
348 |
Q |
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| T |
13192524 |
tgtaattatttttccctaaaaaaaaaaaatcaatatcattatttttgac |
13192572 |
T |
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