View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727-Insertion-5 (Length: 390)
Name: NF5727-Insertion-5
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 38357376 - 38357728
Alignment:
| Q |
8 |
aagggacctttggagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtgaatggtca |
107 |
Q |
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| T |
38357376 |
aagggacctttggagaaccttgccgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtgaatggtca |
38357475 |
T |
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| Q |
108 |
ttatgttttttgtgatgtatactttcttgtaacgttcttcctgcgggaatgtgaattattatcatgtgttgtatgcaagtgaatgttagtc--nnnnnnn |
205 |
Q |
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| T |
38357476 |
ttatgttttttgttatgtatactttcttgtaacgttcttcctgcgggaatgtgaattattatcatgtgttgtatgcaactgaatgttagtcttttttttt |
38357575 |
T |
|
| Q |
206 |
atgtcaatctgctctctcaatcccatatccccagccttatgtttctttcaatcaatgcaaccaaaattgaactaatctaatcgctcaaaaatattgatta |
305 |
Q |
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| T |
38357576 |
atgtcaatctgctctctcaatcccatatccccatctttatgtttcttacaatctatgcaaccaaaattgaactaatcaaatcgctcaaaaatattgatta |
38357675 |
T |
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| Q |
306 |
caaatatccactcatttttaggccacatgtggatgtaaaaataaataaacaaa |
358 |
Q |
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| T |
38357676 |
caaatatccactcatttttagggcacatgtggatgtaataataaataaacaaa |
38357728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 13276287 - 13276379
Alignment:
| Q |
8 |
aagggacctttggagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtga |
100 |
Q |
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| T |
13276287 |
aagggacctttggaaaaccttgctgaccacctcgcagacccggtcaacaacaacgcttgggcctttgctacaaactttgttcttggaaagtga |
13276379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 3573059 - 3573148
Alignment:
| Q |
11 |
ggacctttggagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtga |
100 |
Q |
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| T |
3573059 |
ggacctatagagaatcttgctgaccaccttgctgacccagttaacaacaatgcatgggcctatgccacaaactttgcccctggaaagtga |
3573148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 3576340 - 3576432
Alignment:
| Q |
8 |
aagggacctttggagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtga |
100 |
Q |
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| T |
3576340 |
aagggacctctagagaaccttgccgaccatatcactgaccccgtcaacaacaacgcttgggcctttgccacaaactttgtccccggaaagtga |
3576432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 3578208 - 3578288
Alignment:
| Q |
20 |
gagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtga |
100 |
Q |
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| T |
3578208 |
gagaaccttgctgaccacatcgctgatccagtcaacagcaacgcttgggcctttgccacaaactttgttcccggaaagtga |
3578288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 3584878 - 3584785
Alignment:
| Q |
8 |
aagggacctttggagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttgttcccggaaagtgaa |
101 |
Q |
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| T |
3584878 |
aagggacctttaaaaaaccttgctgaccacatcgctgacccagttaacaacaacgcttgggccttcgccacaaactttgtccccggaaagtgaa |
3584785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 3570009 - 3570087
Alignment:
| Q |
8 |
aagggacctttggagaaccttgctgatcatcttgccgacccagtcaacaacaacgcatgggcctatgccaccaactttg |
86 |
Q |
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| T |
3570009 |
aagggacctattgagaacctcgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgccacaaactttg |
3570087 |
T |
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