View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727-Insertion-6 (Length: 244)
Name: NF5727-Insertion-6
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 35703344 - 35703580
Alignment:
| Q |
8 |
gttggtattctacattggccttaacttcatgtcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttaccagtgtg |
107 |
Q |
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| T |
35703344 |
gttggtattctacattggccttaacttcatgtcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttagcagtgtg |
35703443 |
T |
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| Q |
108 |
ggtgtggttaattttgattcctagatttttccttcctaagctttttgcacatgtgaataatttatttatttatctgcatgaaaaacttgtgtttgagtcc |
207 |
Q |
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| T |
35703444 |
ggtgtgcttaattttgattcctagatttttccttcctaagctttttacacatgtgaataatttatttatttatctgcatgaaaaacttgtgttcgagtcc |
35703543 |
T |
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| Q |
208 |
tcttcatctaagttatgtcattttagcattgaagaat |
244 |
Q |
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| T |
35703544 |
ttttcatctaagttatgtcattttagcattgaagaat |
35703580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 7957073 - 7957199
Alignment:
| Q |
8 |
gttggtattctacattggccttaacttcatgtcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttaccagtgtg |
107 |
Q |
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| T |
7957073 |
gttggcattctacattggccttaacttcatgtcaacaccatctcctgcatccttaaacgcagtttttggtgagtttaatacataatattttagcaatgcg |
7957172 |
T |
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| Q |
108 |
ggtgtggttaattttgattcctagatt |
134 |
Q |
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| T |
7957173 |
ggtgtggttaattttgattgctagatt |
7957199 |
T |
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