View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5727-Insertion-8 (Length: 99)

Name: NF5727-Insertion-8
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5727-Insertion-8
NF5727-Insertion-8
[»] chr7 (4 HSPs)
chr7 (19-74)||(47514430-47514485)
chr7 (7-52)||(47513571-47513616)
chr7 (9-52)||(28869864-28869907)
chr7 (7-52)||(7475964-7476009)
[»] chr8 (3 HSPs)
chr8 (7-72)||(43139942-43140008)
chr8 (7-52)||(21570444-21570489)
chr8 (19-52)||(43139177-43139210)
[»] chr4 (5 HSPs)
chr4 (7-52)||(40260595-40260640)
chr4 (7-52)||(33394487-33394532)
chr4 (19-52)||(33395006-33395039)
chr4 (7-44)||(43326025-43326062)
chr4 (7-40)||(48541436-48541469)
[»] chr6 (1 HSPs)
chr6 (7-52)||(6608432-6608477)
[»] chr3 (12 HSPs)
chr3 (7-44)||(10181383-10181420)
chr3 (9-52)||(13647718-13647761)
chr3 (7-53)||(38507009-38507055)
chr3 (7-52)||(27043900-27043945)
chr3 (7-52)||(33464177-33464222)
chr3 (27-72)||(37510204-37510249)
chr3 (7-43)||(10030031-10030067)
chr3 (7-43)||(10257754-10257790)
chr3 (19-52)||(10030550-10030583)
chr3 (19-52)||(13648515-13648548)
chr3 (19-52)||(38507873-38507906)
chr3 (19-52)||(51800980-51801013)
[»] chr5 (6 HSPs)
chr5 (7-49)||(19033135-19033177)
chr5 (7-44)||(37923473-37923510)
chr5 (19-73)||(37922708-37922761)
chr5 (12-52)||(38943651-38943691)
chr5 (7-44)||(2332311-2332348)
chr5 (19-52)||(38943115-38943148)
[»] chr1 (6 HSPs)
chr1 (7-73)||(37334477-37334542)
chr1 (11-52)||(28284586-28284627)
chr1 (19-52)||(26244472-26244505)
chr1 (19-52)||(50616041-50616074)
chr1 (19-52)||(50623869-50623902)
chr1 (12-44)||(4426282-4426314)
[»] scaffold0022 (2 HSPs)
scaffold0022 (7-44)||(59812-59849)
scaffold0022 (12-44)||(60405-60437)
[»] chr2 (3 HSPs)
chr2 (7-52)||(2283656-2283701)
chr2 (7-44)||(2285605-2285642)
chr2 (7-44)||(40129207-40129244)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 47514430 - 47514485
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaattgccccatgctaaaacccgccca 74  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  47514430 aaataaaacaaaattgatctaagatggggcaattgccccatgctaaaactcgccca 47514485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 47513616 - 47513571
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  47513616 acaactaatagcaaataaaacaaaattgatctaagatggggcaatt 47513571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 28869907 - 28869864
Alignment:
Q  9 aactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  28869907 aactaatagcaaataaaacaaaattgatctaagatggggcaatt 28869864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 7475964 - 7476009
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||    
T  7475964 acaactaatagcaaataaaataaaattgatctaagatggggcaatt 7476009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 5e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 43139942 - 43140008
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaa-ttgccccatgctaaaacccgcc 72  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  43139942 acaactaatagcaaataaaataaaattgatctaagatggggcaatttgccccatgctaaaactcgcc 43140008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 21570489 - 21570444
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||    
T  21570489 acaactaatagcaaataaaacaaaattgatctaagattgggcaatt 21570444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 43139210 - 43139177
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  43139210 aaataaaacaaaattgatctaagatggggcaatt 43139177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 40260640 - 40260595
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  40260640 acaactaatagtaaataaaacaaaattgatctaagatggggcaatt 40260595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 33394532 - 33394487
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  33394532 acaactaatagcaaataaaacaaaattgatctaagatggggcaatt 33394487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 33395006 - 33395039
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  33395006 aaataaaacaaaattgatctaagatggggcaatt 33395039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 43326025 - 43326062
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  43326025 acaactaatagcaaataaaacaaaattgatttaagatg 43326062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 48541469 - 48541436
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaa 40  Q
    |||||||||| |||||||||||||||||||||||    
T  48541469 acaactaataataaataaaacaaaattgatctaa 48541436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 6608432 - 6608477
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  6608432 acaactaatagcaaataaaacaaaattgatctaagatggggcaatt 6608477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 10181420 - 10181383
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10181420 acaactaatagtaaataaaacaaaattgatctaagatg 10181383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 13647761 - 13647718
Alignment:
Q  9 aactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||| ||||||||||||||||||||||||| |||||||    
T  13647761 aactaatagtcaataaaacaaaattgatctaagatggggcaatt 13647718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 38507055 - 38507009
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaattg 53  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  38507055 acaactaatagcaaataaaacaaaattgatcttagatggggcaattg 38507009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 27043900 - 27043945
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||    
T  27043900 acaactaatagcaaataaaacaaaattgatctaagatagggcaatt 27043945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 33464222 - 33464177
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||    
T  33464222 acaactaatagcaaataaaacaaaattgatttaagatggggcaatt 33464177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 37510249 - 37510204
Alignment:
Q  27 caaaattgatctaagatgtggcaattgccccatgctaaaacccgcc 72  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||    
T  37510249 caaaattgatctaagatgggacaattgccccatgctaaaactcgcc 37510204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 10030067 - 10030031
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagat 43  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10030067 acaactaatagcaaataaaacaaaattgatctaagat 10030031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 10257790 - 10257754
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagat 43  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10257790 acaactaatagcaaataaaacaaaattgatctaagat 10257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 10030550 - 10030583
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  10030550 aaataaaacaaaattgatctaagatggggcaatt 10030583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 13648515 - 13648548
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  13648515 aaataaaacaaaattgatctaagatggggcaatt 13648548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 38507873 - 38507906
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  38507873 aaataaaacaaaattgatctaagatggggcaatt 38507906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 51801013 - 51800980
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  51801013 aaataaaacaaaattgatctaagatggggcaatt 51800980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 19033177 - 19033135
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggca 49  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  19033177 acaactaatagcaaataaaacaaaattgatctaagatggggca 19033135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 37923473 - 37923510
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  37923473 acaactaatagcaaataaaacaaaattgatctaagatg 37923510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 37922761 - 37922708
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaattg-ccccatgctaaaacccgccc 73  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||| |||||    
T  37922761 aaataaaacaaaattgatctaaga--tggcaattgtccccatgctaaaactcgccc 37922708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 38943651 - 38943691
Alignment:
Q  12 taatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  38943651 taatagcaaataaaacaaaattgatctaagatggggcaatt 38943691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 2332311 - 2332348
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  2332311 acaactaatagcaaataaaacaaaattgatttaagatg 2332348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 38943148 - 38943115
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  38943148 aaataaaacaaaattgatctaagatggggcaatt 38943115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 37334542 - 37334477
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaattgccccatgctaaaacccgccc 73  Q
    ||||||||||  |||||||||||||||||||||||||| | |||||||||||| | ||||| |||||    
T  37334542 acaactaataccaaataaaacaaaattgatctaagatg-gacaattgccccatacaaaaactcgccc 37334477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 28284586 - 28284627
Alignment:
Q  11 ctaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  28284586 ctaatagcaaataaaacaaaattgatctaagatggggcaatt 28284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 26244472 - 26244505
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  26244472 aaataaaacaaaattgatctaagatggggcaatt 26244505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 50616041 - 50616074
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  50616041 aaataaaacaaaattgatctaagatggggcaatt 50616074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 50623869 - 50623902
Alignment:
Q  19 aaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  50623869 aaataaaacaaaattgatctaagatggggcaatt 50623902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 4426314 - 4426282
Alignment:
Q  12 taatagtaaataaaacaaaattgatctaagatg 44  Q
    |||||| ||||||||||||||||||||||||||    
T  4426314 taatagcaaataaaacaaaattgatctaagatg 4426282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 59849 - 59812
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  59849 acaactaataccaaataaaacaaaattgatctaagatg 59812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 60405 - 60437
Alignment:
Q  12 taatagtaaataaaacaaaattgatctaagatg 44  Q
    |||||| ||||||||||||||||||||||||||    
T  60405 taatagcaaataaaacaaaattgatctaagatg 60437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 2283701 - 2283656
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatgtggcaatt 52  Q
    |||| |||||| ||||||||||||||||||||||| || |||||||    
T  2283701 acaagtaatagcaaataaaacaaaattgatctaagttggggcaatt 2283656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 2285605 - 2285642
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  2285605 acaactaatagcaaataaaacaaaattgatttaagatg 2285642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 40129244 - 40129207
Alignment:
Q  7 acaactaatagtaaataaaacaaaattgatctaagatg 44  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  40129244 acaactaatagcaaataaaagaaaattgatctaagatg 40129207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University