View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5727_high_11 (Length: 236)
Name: NF5727_high_11
Description: NF5727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5727_high_11 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 5638348 - 5638131
Alignment:
| Q |
38 |
tacagtagaacatcacaccaaattctagtggaagttgtttgagtacaatgagtagtctcacatgcaagcaaagctatataagcaatctct---------- |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638348 |
tacagtagaacatcacaccaaattctagtggaagttgtttgagtacaatgagtagtctcacatgcaagcaaagctatataagcaatctctgcaacattta |
5638249 |
T |
|
| Q |
128 |
---------agttcactttaattagacactgaattaagcatttgagtctttaccaaatcaaaacaaactccaggctttattgaaaagtaaaaaatctgat |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5638248 |
tgcaactctagttcactttaattagacactgacttaagcatttgagtctttaccaaatcaaaacaaactacaggctttattgaaaagtaaaaaatctgat |
5638149 |
T |
|
| Q |
219 |
ctcccaaattaagaaatt |
236 |
Q |
| |
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|||||||||||||||||| |
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| T |
5638148 |
ctcccaaattaagaaatt |
5638131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24126008 - 24125972
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
24126008 |
tgggaaacaactcccctttcccaaattaaatgccacc |
24125972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24126730 - 24126766
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
24126730 |
tgggaaacaactcccctttcccaaattaaatgccacc |
24126766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27599247 - 27599211
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
27599247 |
tgggaaacaactcccctttcccattttaaatgccacc |
27599211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27600107 - 27600143
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27600107 |
tgggaaacaactcccctttcccattttaaatgccacc |
27600143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46759274 - 46759310
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
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| T |
46759274 |
tgggaaacaactcccctttcccatactaaatgccacc |
46759310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37546576 - 37546612
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
37546576 |
tgggaaacaactcccctttcccattttaaatgccacc |
37546612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37545712 - 37545675
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacct |
38 |
Q |
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|||||||||||| |||||||| |||||||||||||||| |
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| T |
37545712 |
tgggaaacaacttccctttcctattttaaatgccacct |
37545675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 30809521 - 30809556
Alignment:
| Q |
5 |
aaacaactcccctttcccattttaaatgccacctac |
40 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30809521 |
aaacaactcccctttcccattttaaatgccacctac |
30809556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30808657 - 30808621
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30808657 |
tgggaaacaactctcctttcccattttaaatgccacc |
30808621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45330601 - 45330565
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
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| T |
45330601 |
tgggaaacaactcccctttcccattttaaattccacc |
45330565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45331465 - 45331501
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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| T |
45331465 |
tgggaaacaactcccctttctcattttaaatgccacc |
45331501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47376888 - 47376852
Alignment:
| Q |
1 |
tgggaaacaactcccctttcccattttaaatgccacc |
37 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
47376888 |
tgggaaacaactcccctttcccaaattaaatgccacc |
47376852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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